PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03640.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 325aa    MW: 36937.9 Da    PI: 10.3233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03640.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-09346344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              WT+++d+l+ ++  +++ +   +W +Ia +++ g+t  ++  ++
  Sme2.5_03640.1_g00007.1  3 TWTKDDDKLFENGLVLYPDNvvdRWQLIADHVP-GKTVDDIMAHY 46
                             7*****************99*************.********999 PP
2Myb_DNA-binding25.14.1e-08236278547
                              -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              T+e d l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Sme2.5_03640.1_g00007.1 236 TAEPDRLFLIGLDKYGKGDWRSISRNVVVSRTPTQVASHAQKY 278
                              566688999999******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-5152IPR001005SANT/Myb domain
PROSITE profilePS5129311.462148IPR017884SANT domain
SuperFamilySSF466891.94E-10257IPR009057Homeodomain-like
PfamPF002491.6E-7347IPR001005SANT/Myb domain
CDDcd001671.04E-7346No hitNo description
PROSITE profilePS5129413.325227283IPR017930Myb domain
SMARTSM007170.02231281IPR001005SANT/Myb domain
PfamPF002495.1E-6236278IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-6236277IPR009057Homeodomain-like
CDDcd001675.61E-5236279No hitNo description
TIGRFAMsTIGR015571.5E-11236282IPR006447Myb domain, plants
SuperFamilySSF466891.2E-10236283IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSTWTKDDDK LFENGLVLYP DNVVDRWQLI ADHVPGKTVD DIMAHYDDLV HDVVEIDAGR  60
IELPRYTDDP GEVEGDSQIS FGSGKKNYEI ERKKGTPWTE EEHSEEKGFL FYSSKEKKIG  120
KGTPFFFLIT MVSRQSPTLF SIPKTQKSFS GDGNPGQVNK GAKPKSRFIR IRSELGRKTL  180
KQMVSEPGSP KVSCTGRVRW SKSKKESRAI RTGFWKKVRA ALKIWPGEKG RDSVQTAEPD  240
RLFLIGLDKY GKGDWRSISR NVVVSRTPTQ VASHAQKYFI RQQAMKKERK RSSIHDITTA  300
VDTKPVPPQS SFQNQTSSQN FNFAM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345871.15e-58PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN63e-27SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0V0HI201e-56A0A0V0HI20_SOLCH; Putative transcription factor DIVARICATA-like
TrEMBLM1C5T11e-56M1C5T1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000604032e-57(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-31MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]