PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03616.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WOX | ||||||||
Protein Properties | Length: 256aa MW: 27561.7 Da PI: 6.9457 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.3 | 1.8e-15 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Sme2.5_03616.1_g00007.1 22 RSRWNPKPEQILILESIFNSgMVNPPKDETVRIRKILqqfgAVGDANVFYWFQNRRSRSRR 82 89*****************99****************99999****************997 PP | |||||||
2 | Wus_type_Homeobox | 107.3 | 8.9e-35 | 21 | 84 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ L+++G+++d+NVfyWFQNr++R+r++q Sme2.5_03616.1_g00007.1 21 VRSRWNPKPEQILILESIFNSGMVNPPKDETVRIRKILQQFGAVGDANVFYWFQNRRSRSRRRQ 84 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-14 | 17 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.143 | 18 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-6 | 20 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 21 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.7E-13 | 22 | 82 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MENEVQDSTS SNQSCERNEP VRSRWNPKPE QILILESIFN SGMVNPPKDE TVRIRKILQQ 60 FGAVGDANVF YWFQNRRSRS RRRQRQIQAS LSAASDSSGG GGKQSASSGG AIQLDSSTGN 120 FRPSLPMAAP SNYLVLGSSF SSSSSGGAVG NANDGSDGLL PFSDQMGLPK IEQNSAVTSI 180 QCSPTDNVNL HHQTGFITVF INGVATEVPR GPLDMKAMFG PGNLVLYHSS GLPVLVNEYG 240 FIVQSLQHGE SYFLVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 7e-62 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609299.2 | 1e-138 | PREDICTED: WUSCHEL-related homeobox 11 isoform X2 | ||||
Swissprot | Q6X7J3 | 2e-64 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A2S1B7G5 | 1e-137 | A0A2S1B7G5_TOBAC; WOX11 | ||||
STRING | XP_009609298.1 | 1e-135 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 5e-34 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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