PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03585.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 133aa MW: 15119.2 Da PI: 10.3238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 45 | 104 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+ +++ n+ + kr +l +f t eAa+a+++a k++ g+ Sme2.5_03585.1_g00005.1 45 CKYRGVRQKT-WGKWVAEIREpVYNtNQhqSNgKRLWLDTFSTDVEAARAYDKATKAMQGH 104 79*****765.**********877776695449**********99***********99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.84E-26 | 45 | 112 | No hit | No description |
Pfam | PF00847 | 7.1E-13 | 45 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-27 | 46 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 46 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.443 | 46 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-18 | 46 | 112 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-8 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MWMNHKQEHN ATLEIGLKKK RKKSPADGSS KGCMRGKIRP ENLNCKYRGV RQKTWGKWVA 60 EIREPVYNTN QHQSNGKRLW LDTFSTDVEA ARAYDKATKA MQGHDAILNF PNYCVQNGQL 120 ANDSLSVSIA QIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 44 | 112 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 22 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016476387.1 | 2e-62 | PREDICTED: uncharacterized protein LOC107797978 | ||||
Swissprot | A2WL19 | 5e-30 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A1S4AI72 | 5e-61 | A0A1S4AI72_TOBAC; uncharacterized protein LOC107797978 | ||||
STRING | XP_009599185.1 | 1e-61 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 8e-32 | ERF family protein |