PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03554.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 578aa MW: 65616.5 Da PI: 5.7415 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 306.3 | 7.3e-94 | 208 | 576 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalk 82 lv+lLl++Ae v++++++ a++ +ar ++as +g+p+qRl +yf eAL++r+ r e+ ++ + e + + ++ Sme2.5_03554.1_g00002.1 208 LVHLLLAAAEEVDQQQFHSASQSIARCLQNASVTGNPIQRLCFYFGEALQERIDR---EIGRSP-CFERKLRFlstlALGTTPEAL 289 68*****************************************************...333222.222221111111222222234 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLak 167 +++ P+ ++ +++ NqaI+e v+g+ ++H +Df+i G+Q L+qaL++R+ + l+iT++g+ ++ke++eetg+rL++ Sme2.5_03554.1_g00002.1 290 TYHTEIPFCQVLQFAGNQAIVENVKGAIKIHLVDFNIRSGIQCTGLMQALSERRdCPIELLKITAIGH---QEKEKIEETGKRLQS 372 488899*********************************************999345569********...579************ PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 fA++l++pf+f+++ ++++dl++e+ +vk +Ea+aV + l ++ + +++ d++++++++l+P vvvv e ea+hns+sF Sme2.5_03554.1_g00002.1 373 FANSLNLPFSFDMVFISDMKDLKVESVNVKADEAVAVYCYAVLRTMI----CRQDYLDNTMRVIRGLRPSVVVVHEVEANHNSPSF 454 *****************************************999998....77778888*************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 l+rf+eal +ys+lfd++e + r++ r+ +E + +g+ i+n+va+egaer+ r+ +l Wr+ + ++G+ +++lse+ qa+l Sme2.5_03554.1_g00002.1 455 LNRFVEALFFYSVLFDCFEDCMDRDNLVRKRIEVFHIGEGIRNMVAAEGAERFTRNVKLDVWRAYFARFGMVEMELSESSRYQANL 540 ************************************************************************************** PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l++++ + +v+++ ++l+ gWk+ p+ svS W+ Sme2.5_03554.1_g00002.1 541 ILKQFShGSSCTVQNDGKALLVGWKGTPIESVSIWK 576 ******8888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.547 | 182 | 555 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-91 | 208 | 576 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MDQVSFPTNG FIVFQDGHNH LQECRRNELI NNGIVDPWFE VNREDTAFHL KYQENPSDKQ 60 VQLLEDQQQN ISDHWTQSDD SSNMHLLLQP IQIQTIPGSS SGVQPQLPRL DNFHKEKTNS 120 ISLASLELLN SCGRLFNKSS EENLSIVLSN KARGSDIPKL STEEILQVAG ERYIQYSTQR 180 VDGLSVFVHP YASSLSGLSI EQTKDMELVH LLLAAAEEVD QQQFHSASQS IARCLQNASV 240 TGNPIQRLCF YFGEALQERI DREIGRSPCF ERKLRFLSTL ALGTTPEALT YHTEIPFCQV 300 LQFAGNQAIV ENVKGAIKIH LVDFNIRSGI QCTGLMQALS ERRDCPIELL KITAIGHQEK 360 EKIEETGKRL QSFANSLNLP FSFDMVFISD MKDLKVESVN VKADEAVAVY CYAVLRTMIC 420 RQDYLDNTMR VIRGLRPSVV VVHEVEANHN SPSFLNRFVE ALFFYSVLFD CFEDCMDRDN 480 LVRKRIEVFH IGEGIRNMVA AEGAERFTRN VKLDVWRAYF ARFGMVEMEL SESSRYQANL 540 ILKQFSHGSS CTVQNDGKAL LVGWKGTPIE SVSIWKLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-44 | 227 | 576 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355859.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | M1AB56 | 0.0 | M1AB56_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400018792 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 4e-41 | RGA-like 1 |