PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_03550.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 205aa MW: 23720.9 Da PI: 8.6202 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2.1e-08 | 6 | 41 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed+ll+d++k++G + R++k+c++rw +yl Sme2.5_03550.1_g00002.1 6 KGAWSPQEDKLLLDYIKKHG------------LSRSGKSCRLRWVNYL 41 79******************............46899*********97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 47 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE + +++ ++ lG++ W++Ia++++ gR+++++k++++++l Sme2.5_03550.1_g00002.1 47 RGPFSLEETQTIIRMHQSLGNR-WSAIAKELP-GRCDNEIKNFYNTHL 92 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.918 | 1 | 41 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-22 | 5 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-6 | 5 | 43 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 6 | 41 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-14 | 7 | 48 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.529 | 42 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 47 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-26 | 49 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.90E-11 | 49 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MDYVTKGAWS PQEDKLLLDY IKKHGLSRSG KSCRLRWVNY LRPDLKRGPF SLEETQTIIR 60 MHQSLGNRWS AIAKELPGRC DNEIKNFYNT HLKKRVEVKP TKAKVEKAKQ IEMFQKKPTA 120 SAPDQSLHEF TKSSSSSYIT FDENYRILEM LDQNNDVTSV VNDENIVILE SNPSSLDLYK 180 KDVSVHSSNV DFWLELYMAA DNLNT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-23 | 4 | 98 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078427.1 | 1e-93 | transcription factor MYB14-like | ||||
TrEMBL | K4C4L1 | 6e-89 | K4C4L1_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1CMY6 | 8e-89 | M1CMY6_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g033870.1.1 | 1e-89 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400070912 | 1e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 7e-42 | myb domain protein 14 |