PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03503.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CPP
Protein Properties Length: 206aa    MW: 22705.1 Da    PI: 8.488
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03503.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR53.16.3e-171352140
                      TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                             k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Sme2.5_03503.1_g00002.1 13 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 52
                             589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.951153IPR005172CRC domain
SMARTSM011143.5E-201354IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-131651IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MQEEAEDGLV LPKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCIDCKN FEGSEERRAL  60
LHGDHANNIA YLQQAANAAI TGAIGSSGYG SPPVNKKRKP QELFSGSMII DPVHRLGQFQ  120
QENQIKASVP WSLSSIPGTH VGNAAALCPS KFTYRSLLAD VIQPHDIKEL CSVLVVYARE  180
AAKILTDQWE AFKVLLSPFS RLKKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1746274132Protein lin-54 homolog
5fd3_B7e-1746274132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134470.0BT013447.1 Lycopersicon esculentum clone 132102R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352153.11e-114PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD12e-74TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0V0IK561e-112A0A0V0IK56_SOLCH; Uncharacterized protein
STRINGXP_009595583.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-77Tesmin/TSO1-like CXC domain-containing protein