PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03471.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 182aa MW: 20827.5 Da PI: 9.8848 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.8 | 1e-28 | 74 | 134 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 ++Dgy+WrKYGqK+ +++++pr++++C++a +Cpvkkkv+r+ +d+++++ tYegeHnh+k Sme2.5_03471.1_g00002.1 74 VKDGYEWRKYGQKVTRDNPYPRAFFKCSFApTCPVKKKVQRCVDDKSIIVATYEGEHNHSK 134 58***************************99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-28 | 65 | 133 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-25 | 69 | 133 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.547 | 69 | 135 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-30 | 74 | 134 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-23 | 75 | 132 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSNCTASGMS RKRKAENVGL FDARFHGINS ELSDEDLSCN KARLVHHDHF QPKKINYTRY 60 VRTTQASHDT ALIVKDGYEW RKYGQKVTRD NPYPRAFFKC SFAPTCPVKK KVQRCVDDKS 120 IIVATYEGEH NHSKELLETG EGSSDQLVNG NRRISTSITA VGHSHNKQPE FHKLLKTKWL 180 HP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 58 | 132 | 1 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 1e-34 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346606.2 | 9e-66 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | M1CSI6 | 6e-65 | M1CSI6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400073710 | 1e-65 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17255 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 6e-37 | WRKY DNA-binding protein 18 |