PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03467.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 1552aa    MW: 169558 Da    PI: 6.1116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03467.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.9e-0615301552326
                               S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                               +++C+ f+++G Ck G+ C + H+
  Sme2.5_03467.1_g00004.1 1530 QRICK-FYESGRCKKGAACDYLHP 1552
                               689**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-897151IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.3E-8102158IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564104170IPR019787Zinc finger, PHD-finger
CDDcd155681.96E-19106151No hitNo description
SMARTSM002493.1E-7106152IPR001965Zinc finger, PHD-type
PROSITE patternPS013590107167IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475921.16E-19355433IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.105.0E-24357440IPR003121SWIB/MDM2 domain
SMARTSM001516.6E-4359437IPR019835SWIB domain
PfamPF022015.4E-13359432IPR003121SWIB/MDM2 domain
PROSITE profilePS5136023.943490623IPR004343Plus-3 domain
SMARTSM007198.2E-42490600IPR004343Plus-3 domain
SuperFamilySSF1590429.81E-30491619IPR004343Plus-3 domain
PfamPF031262.1E-21495598IPR004343Plus-3 domain
SuperFamilySSF552772.49E-14766828IPR003169GYF domain
PROSITE profilePS5082913.838776829IPR003169GYF domain
CDDcd000722.22E-13776832No hitNo description
SMARTSM004442.2E-8777831IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.2E-14778829IPR003169GYF domain
PfamPF022132.5E-9779820IPR003169GYF domain
PROSITE profilePS5010315.24415271552IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-615271551IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-415311551IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1552 aa     Download sequence    Send to blast
MDAAAGGNSS SGTYTDSRRF DEGAATSMEL QKSEQCSSVH YMDGSQLVGV PSSVAGGAPA  60
RVTVDARTSD AGVIGGIDNR KRGRPSRNLV AKPPPLKKPR VEDEDVCFIC FDGGSLVLCD  120
RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAS HYLCYTCTYS LCKACTKNAD  180
YVCVRGNKGF CSTCMKTIML IENKDQADKE MVQVDFDDKT SWEYLFKVYW VILKENLSLT  240
LDELLQAKNP WKESNAVHGR RSLLPYGHYV ANDGKGTAGK SFDHLELKKH LELSKKDPPT  300
TESRSTAESN DPSIFSSTPQ SELTKPAEEL ELQNEDCLRT KQGSAVMQTS VNGCMEWASK  360
ELLDFVAYMK DGDTSAISQF DVQTLLLDYI KKNNLRDPRR KSQIICDLRL KSLFGKPYVG  420
HIEMLKLIEF HFLIKEDSQK SAFIPAGIVG TVTSHVELDD GIDISSSKKR RNRKNGEVKM  480
SQINLDEYAA IDAHNINFLY LRRDLMENLA EDLEKFHDRV TGSVVRIRIP GNDQKQEIYR  540
LVHVVGTCRT SEPYKIRDKT VDVLLEVLNL DKKETVSIDT ISNQDFCEDE CRRLRQSIKC  600
GLVKRVTVGE IQNKAMELRA VKLYDLENID LDHEDFLDCS TLRECIKKLE LLKTPEERHR  660
RLLEIPEVHA DPKMNPDYES EGNDGEHNDK RKVERPAPKC TRISRRKLQS SGSREEGSIM  720
ARCRMSGKGE ACGTNILDKQ VNQLPVEQAV DRSGSETSVA SLSTANSSSV NCSETDKLWH  780
YRDPAKRIQG PFSVMQLRKW NTSGLFPPDM RIWTNHEHED SILLTNALKG IFHKESQVHD  840
KRSSQSWEPN GSDSRTTVRW SENATGSGGE CGKRVALGNP HNASYYSNGN SEFTRMDGLS  900
HSFPQCVESL KGNNSCSDKP QPSSSPSSSQ REVILALPRQ GKGHENDNYR SVTDYGTQNS  960
RKSTLCHAQS NSWNSGPSSG QSQISFTSNT GSINLDSGSS FAPVTKSSDS FEQKGKMNLP  1020
DLPSPTPETS YGDLEAQAAE KLLLLSSVIP VRGSDIHDLP SPTPISNSEA QGAHAAENKE  1080
SVPSSLPDSE AQDGHAAENK ASGPSSLPDS EAQGGHAAEN KESGPSILPD SEAQGGHAGE  1140
NKESGPSSLP VQESGQRWSG DSGPVVGGAQ LHEIADEWGK SSSAAKPSTE EWDSRHVSVS  1200
SLKPADTVGD HVATPSNANQ LPAKPSAEVW DSGLVTVSSL KPAEAVGDDA VTPASNADQL  1260
NHTSPSHPMP NFFGEPIEFS TLAEESVSDL LAEVDAMESQ NQNDMGSPTS AMRCDEEMIP  1320
GCKTDCFSPI EELSHTHDPV RSDALSSTID LQLPCQSTVT DETVGASRAD AFDPLRRSGG  1380
NSSTSSEGET KSADVLFSQG DAGSSIPTPC TTSQTAAFSA TGRSTVFEGM TNGRGTAPGN  1440
PSWGGPVQGY TNVGFGSSTG AAWVNSHMNR GTPFTGNPVW DSQRRYAGER SGGHWAHQGG  1500
EPGFGRVRPS WNRQQPYGGG GYSRPPPKNQ RICKFYESGR CKKGAACDYL HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-1398173981Histone-lysine N-methyltransferase NSD3
4gnd_C2e-1398173981Histone-lysine N-methyltransferase NSD3
4gne_A2e-1398173981Histone-lysine N-methyltransferase NSD3
4gnf_A2e-1398173981Histone-lysine N-methyltransferase NSD3
4gng_A2e-1398173981Histone-lysine N-methyltransferase NSD3
4gng_D2e-1398173981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340701.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A1S4ACH60.0A0A1S4ACH6_TOBAC; zinc finger CCCH domain-containing protein 44-like isoform X3
STRINGXP_009600608.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding