PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03441.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28769.8 Da PI: 6.0436 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta++Aa+a++ a+++++g Sme2.5_03441.1_g00007.1 79 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALAIKG 128 69****888.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 79 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 79 | 137 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.037 | 79 | 136 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 79 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-35 | 79 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.31E-33 | 80 | 138 | No hit | No description |
PRINTS | PR00367 | 3.1E-10 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MENQEDTINL ENRHDFISHG LNSPLSTTTS SLSSSSSSFF SSSNALISVK CQDSKKIQNF 60 VQNEEKKRND EKDDDKHPTY RGVRKRSWGK WVSEIREPRK KSRIWLGTYP TAQMAARAHD 120 VAALAIKGCS AHLNFPHLVD KYPRPASTSH KDTQAAAAKA AAITFPEEEE DRVNPNRVEL 180 RNCHSTTNLF LENTKESLNS PSREDDDTFF DLPDLSIDVV DQNNSHWCTM STWQQLIGAD 240 TTVYRLDEPL LWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 77 | 137 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-179 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075712.1 | 1e-124 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 3e-50 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | M1AA09 | 1e-119 | M1AA09_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g050830.1.1 | 1e-123 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-46 | ERF family protein |
Publications ? help Back to Top | |||
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