PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03434.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 225aa    MW: 25955.8 Da    PI: 9.7302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03434.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-15855148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W+++Ed++l+d++ ++G  +W++ ++  g+ Rt+k+c++rw +yl
  Sme2.5_03434.1_g00003.1  8 KGAWSPQEDQKLKDYIMRFGIWNWNLMPKFAGLSRTGKSCRLRWMNYL 55
                             79******************99************************97 PP

2Myb_DNA-binding50.16.3e-1661106148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++TteE e  ++  ++lG++ W++Ia++++ gRt++++k++++++l
  Sme2.5_03434.1_g00003.1  61 RGPFTTEERETVIKMYQELGNR-WAAIAARLP-GRTDNEVKNFFHTHL 106
                              89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.858355IPR017930Myb domain
SuperFamilySSF466891.96E-286102IPR009057Homeodomain-like
SMARTSM007171.1E-11757IPR001005SANT/Myb domain
PfamPF002491.9E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-22962IPR009057Homeodomain-like
CDDcd001677.29E-91055No hitNo description
PROSITE profilePS5129421.80656110IPR017930Myb domain
SMARTSM007173.8E-1560108IPR001005SANT/Myb domain
PfamPF002493.2E-1461106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2463110IPR009057Homeodomain-like
CDDcd001675.83E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEKIMIKKGA WSPQEDQKLK DYIMRFGIWN WNLMPKFAGL SRTGKSCRLR WMNYLHPDVK  60
RGPFTTEERE TVIKMYQELG NRWAAIAARL PGRTDNEVKN FFHTHLKKHL GLKTSPGKLS  120
KATRCKEKKK TKLAHEEKPV NICDISPAAS SSSIITFDQN EKMDIYVDQS NPIIDMPNTV  180
ILESNPAAIT HHDYSHTLSI HSLDQFVDTT SFWLNLLNDA DRLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2481107108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754425e-38HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755155e-38HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567875.11e-103PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX85e-48MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2G2X4T01e-102A0A2G2X4T0_CAPBA; Transcription factor MYB3
STRINGXP_009790938.13e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-48myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]