PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03434.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25955.8 Da PI: 9.7302 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d++ ++G +W++ ++ g+ Rt+k+c++rw +yl Sme2.5_03434.1_g00003.1 8 KGAWSPQEDQKLKDYIMRFGIWNWNLMPKFAGLSRTGKSCRLRWMNYL 55 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.3e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++TteE e ++ ++lG++ W++Ia++++ gRt++++k++++++l Sme2.5_03434.1_g00003.1 61 RGPFTTEERETVIKMYQELGNR-WAAIAARLP-GRTDNEVKNFFHTHL 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.858 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.96E-28 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.29E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 21.806 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 61 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 63 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.83E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEKIMIKKGA WSPQEDQKLK DYIMRFGIWN WNLMPKFAGL SRTGKSCRLR WMNYLHPDVK 60 RGPFTTEERE TVIKMYQELG NRWAAIAARL PGRTDNEVKN FFHTHLKKHL GLKTSPGKLS 120 KATRCKEKKK TKLAHEEKPV NICDISPAAS SSSIITFDQN EKMDIYVDQS NPIIDMPNTV 180 ILESNPAAIT HHDYSHTLSI HSLDQFVDTT SFWLNLLNDA DRLVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 8 | 110 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 5e-38 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 5e-38 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567875.1 | 1e-103 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 5e-48 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A2G2X4T0 | 1e-102 | A0A2G2X4T0_CAPBA; Transcription factor MYB3 | ||||
STRING | XP_009790938.1 | 3e-87 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-48 | myb domain protein 14 |
Publications ? help Back to Top | |||
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