PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03422.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 24699.4 Da PI: 9.1477 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 127 | 167 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +Av+Y+k L Sme2.5_03422.1_g00002.1 127 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 167 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.345 | 118 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-14 | 119 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-14 | 122 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-13 | 124 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-6 | 128 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.26E-6 | 141 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDLQDIAHSL ELGFSNSNIE MIPLQPPLHN SNYLMNSPPS NFSFMGNPIE EPTAAVPILS 60 SIDEIIASAH ASGNDYSCLQ RRNSMEAMRE MIFRIAMMQP IHIDPESVKP PKRKNVKISK 120 DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA VHYVKFLKKQ LQSLEQAAVN 180 NRPMVAGVST TMSSPGPMNY NSSSIRACQP HPSMNSSAQM LS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215383 | 0.0 | AC215383.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0104A12, complete sequence. | |||
GenBank | AC215449 | 0.0 | AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339941.1 | 1e-140 | PREDICTED: transcription factor HEC1 | ||||
TrEMBL | M0ZXV9 | 1e-138 | M0ZXV9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010344 | 1e-139 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 5e-44 | bHLH family protein |