PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03412.1_g00012.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HSF

Protein Properties

Length: 317aa MW: 36775.4 Da PI: 9.3163

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03412.1_g00012.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.8	8.5e-34	33	124	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 F++k+y+++ed++++++isws +++sfv++d+++f+ ++LpkyFkh+n++SFv QLn YgFkk+ ++ we+ h +F+ Sme2.5_03412.1_g00012.1 33 FVTKTYDMVEDPNTNSIISWSPSSTSFVIWDHNRFSFEILPKYFKHTNMSSFVYQLNNYGFKKIGLQK---------WEYGHYWFQ 109 9******************999************************************9998.........***** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+k+ll++ikr+++ Sme2.5_03412.1_g00012.1 110 AGRKDLLSNIKRRTK 124 **********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.6E-34	29	122	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.7E-47	29	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.28E-31	30	122	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-29	33	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-17	33	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-17	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-17	84	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAMNNMSQFS AGENRHDVSD GAKVVREPGI APFVTKTYDM VEDPNTNSII SWSPSSTSFV 60 IWDHNRFSFE ILPKYFKHTN MSSFVYQLNN YGFKKIGLQK WEYGHYWFQA GRKDLLSNIK 120 RRTKTLNAQR DFNQETYFYG VVEEMRKQRD LNNTVKSEFD KLKERQDDMV NGIASLKEYL 180 EKSEAESRKF LCFLAKAVKQ VVTANRGTKR YEEFRDVITS KRRVEDATGS STSSVRKKMI 240 DFSVIKRAHD IVQQPKNEGE DNTIHFCNFD CQDTAPPANV IRYPDVDFLE STSPAKSAFV 300 YPINTGFERK RLTTPTE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	17	123	13	130	Heat shock factor protein 1
5d5v_B	2e-25	17	123	13	130	Heat shock factor protein 1
5d5v_D	2e-25	17	123	13	130	Heat shock factor protein 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170900.1	1e-145	PREDICTED: heat stress transcription factor A-6b-like
TrEMBL	M1DSF9	1e-144	M1DSF9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400093663	1e-144	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13740	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-33	heat shock transcription factor A2