PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03410.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 825aa    MW: 89748 Da    PI: 6.3299
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03410.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.18.5e-1254538122374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +   +++ ++a+++f+ +
  Sme2.5_03410.1_g00006.1 453 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPMTSVPMLYTQKMASAFQVFNGI 538
                              579*****************************************************************9888************** PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                              sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg
  Sme2.5_03410.1_g00006.1 539 SPFIKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SVDALEATGKRLSDFAERLG 620
                              **************************************************************....9******************* PP

                     GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                              +pfef + +a+++ +l++ +L+v+++Ea+aV++    h+l+d ++s ++    +L l++++ Pkvv+vveq+++h ++sFl rf+e
  Sme2.5_03410.1_g00006.1 621 LPFEFLP-IADKVGNLDPGKLNVSKREAVAVHWLQ--HSLYDVTGSDSN----TLALLQRVGPKVVTVVEQDLSH-AGSFLGRFVE 698
                              *******.7*************************9..999999999999....**********************.899******* PP

                     GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                              a++yysalfdsl a +++eseer++vE++ll++ei+nv+a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa lll +++
  Sme2.5_03410.1_g00006.1 699 AIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVK-FNNWREKLQQSGFRCLSLAGNAAAQATLLLGMFP 783
                              *********************************************888776.********************************** PP

                     GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              s+gy++ e++g+l lgWkd  L+++SaWr
  Sme2.5_03410.1_g00006.1 784 SQGYTLVEDNGTLKLGWKDLCLFTASAWR 812
                              ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.841426792IPR005202Transcription factor GRAS
PfamPF035142.9E-122453812IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MAKSLPDNCT VTTGANVVLI GSSGEKLQVV SKDVNNVHLL HCDNGKMVRK RAASDMEIQT  60
GAGEDHRYLR RPPTIGGSHV QLGDLRVCGT SNFGHNINNN PTSTMTTQVS NYSTMQMLAS  120
STNLCGVTSR GGPGIDTVFS SSIPNLTYTD AITSHHQPQG PQTQSNNNQS PSVCVFSGLP  180
LFPPDRNRQN SGLLTQQPAA AAAAVVSSPL TTRIDSMEDN TSATAWIDSI IKDLINSSAQ  240
VSVPQLIQNV REIIHPCNPY LASLLEYRLR SLTSNNNGGA DQNDPMECWR RKEPLPQLAG  300
LQQAQNNANL LQHNILSLPD SSNQQYLNWE IALPASHNAP VAPSLNQHQQ LGCNNPTATD  360
LSFVTPPILS PQVQQQPPQE ESPHSQQQAA AVDLEQQKQQ QSSSSLSPSS MVADSSAKTK  420
TSTPAPLVPV NTYREKKEEE RQQKRDEEGL HLLTLLLQCA EAVSADNLEE ANKMLLEVSE  480
LSTPFGTSAQ RVAAYFSEAM SARLLNSCLG IYAALPMTSV PMLYTQKMAS AFQVFNGISP  540
FIKFSHFTAN QAIQEAFERE DRVHIIDLDI MQGLQWPGLF HILASRPGGP PFVRLTGLGT  600
SVDALEATGK RLSDFAERLG LPFEFLPIAD KVGNLDPGKL NVSKREAVAV HWLQHSLYDV  660
TGSDSNTLAL LQRVGPKVVT VVEQDLSHAG SFLGRFVEAI HYYSALFDSL GACYGEESEE  720
RHVVEQQLLS KEIRNVLAVG GPSRSGEVKF NNWREKLQQS GFRCLSLAGN AAAQATLLLG  780
MFPSQGYTLV EDNGTLKLGW KDLCLFTASA WRPNSLHALA PPSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04368153382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089256.10.0protein SCARECROW
RefseqXP_015089257.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A3Q7IJC30.0A0A3Q7IJC3_SOLLC; Uncharacterized protein
STRINGSolyc10g074680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein