PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03374.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HB-other

Protein Properties

Length: 529aa MW: 59934.1 Da PI: 6.3738

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03374.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	26	81	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + R t+ q+e Le+++e+++yp+++++ e A++lgLte+qV+ WF+ rR k+k+ Sme2.5_03374.1_g00004.1 26 KARIIKTPAQIEGLEKFYEEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKHKR 81 678999*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-18	8	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-17	11	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.726	22	82	IPR001356	Homeobox domain
SMART	SM00389	5.0E-19	24	86	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-16	26	81	IPR001356	Homeobox domain
CDD	cd00086	2.44E-16	26	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MDDYLSASDS REIHSEDDKG HVGKIKARII KTPAQIEGLE KFYEEHKYPT ESMKLEVAQS 60 LGLTEKQVSG WFCHRRLKHK RLLRRETYAN GRQDRSSGGI QDRGSGYRQD SCGSTKQGDD 120 KYFDHREVES RRLNVPEVSA ADVACDVDTR YKAEPNLMED TLSGSSSSLQ DGSFSQNVES 180 FDVATSRYLP CNEPTDLRCV KPRTGPSGYL KVKRKVENAS VTAVKGQLGS LYRQDGPQLS 240 VVFDPLPQGA FESAVRTLVY DPEYAGEPVP DVTPNFTRVY KQFNSCIGYG SISKTNSHVS 300 DLDGASFKKS NKSAHPEYYV NQKPAWNSSM HNGYHYHLGQ NSSMEMHKDS QRELAVEGKC 360 NYKFMAKHDG AEIKTSPGSS GGFQSPYIGK VNREQVMPRF TSCNNMSLEI AEEENLECKP 420 SNFVRKGSKH RYCPEREHFS EVEKDYIHVE RPAVDENYNE DRVNIPWENE MRAAKRAWDD 480 EAPNHQEYMR KASVTRIISQ TSYQTRSATE MSSSCSEDDK TEDTSSFED

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MDDYLSASDS REIHSEDDKG HVGKIKARII KTPAQIEGLE KFYEEHKYPT ESMKLEVAQS  60
LGLTEKQVSG WFCHRRLKHK RLLRRETYAN GRQDRSSGGI QDRGSGYRQD SCGSTKQGDD  120
KYFDHREVES RRLNVPEVSA ADVACDVDTR YKAEPNLMED TLSGSSSSLQ DGSFSQNVES  180
FDVATSRYLP CNEPTDLRCV KPRTGPSGYL KVKRKVENAS VTAVKGQLGS LYRQDGPQLS  240
VVFDPLPQGA FESAVRTLVY DPEYAGEPVP DVTPNFTRVY KQFNSCIGYG SISKTNSHVS  300
DLDGASFKKS NKSAHPEYYV NQKPAWNSSM HNGYHYHLGQ NSSMEMHKDS QRELAVEGKC  360
NYKFMAKHDG AEIKTSPGSS GGFQSPYIGK VNREQVMPRF TSCNNMSLEI AEEENLECKP  420
SNFVRKGSKH RYCPEREHFS EVEKDYIHVE RPAVDENYNE DRVNIPWENE MRAAKRAWDD  480
EAPNHQEYMR KASVTRIISQ TSYQTRSATE MSSSCSEDDK TEDTSSFED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349800.1	0.0	PREDICTED: uncharacterized protein LOC102600158
TrEMBL	A0A0V0IK25	0.0	A0A0V0IK25_SOLCH; Putative ovule protein
STRING	Solyc12g099760.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-54	HB-other family protein