PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03330.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 308aa    MW: 33723.2 Da    PI: 4.6121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03330.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-1679127355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  Sme2.5_03330.1_g00005.1  79 FVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAAMSIKG 127
                              78***998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-3078136IPR001471AP2/ERF domain
SMARTSM003801.8E-3378141IPR001471AP2/ERF domain
PROSITE profilePS5103221.64178135IPR001471AP2/ERF domain
PRINTSPR003671.6E-87990IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1979135IPR016177DNA-binding domain
CDDcd000182.41E-3079135No hitNo description
PfamPF008479.8E-1179127IPR001471AP2/ERF domain
PRINTSPR003671.6E-8101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPTEQPNCSE STESSSNSSS SSSPSSVVLH PLPQINSKNR LKRCRGGGEE DEDFNNGSPI  60
CKIKKKNDEN ISNAKSNSFV GVRMRAWGKW VSEIREPKKK SRIWLGTFAT AEMAARAHDV  120
AAMSIKGTSA ILNFPQFAHL LPRPITCSPR DVQAAAVKAA HMDHLNPNSS SSSSSSSSSL  180
LLPEPSTTIT SEDTSMTSSS SSLSLASGII SSSFSREDEE SRLLLPPEAA AAQQEELGEI  240
VELPRLGTSY ESVESTQEVL SLFETEEWWD NYGNSCEYFF GEENYINMEF TGLENVVSTG  300
FESFLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1773136973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5000122e-90AF500012.1 Lycopersicon esculentum dehydration responsive element binding protein (DREB2) mRNA, complete cds.
GenBankHG9755242e-90HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166849.11e-114PREDICTED: ethylene-responsive transcription factor ERF037-like
TrEMBLM0ZHP21e-113M0ZHP2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009861e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-46ERF family protein