PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03330.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 33723.2 Da PI: 4.6121 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 79 | 127 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++g Sme2.5_03330.1_g00005.1 79 FVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAAMSIKG 127 78***998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-30 | 78 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-33 | 78 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.641 | 78 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 79 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-19 | 79 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.41E-30 | 79 | 135 | No hit | No description |
Pfam | PF00847 | 9.8E-11 | 79 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MPTEQPNCSE STESSSNSSS SSSPSSVVLH PLPQINSKNR LKRCRGGGEE DEDFNNGSPI 60 CKIKKKNDEN ISNAKSNSFV GVRMRAWGKW VSEIREPKKK SRIWLGTFAT AEMAARAHDV 120 AAMSIKGTSA ILNFPQFAHL LPRPITCSPR DVQAAAVKAA HMDHLNPNSS SSSSSSSSSL 180 LLPEPSTTIT SEDTSMTSSS SSLSLASGII SSSFSREDEE SRLLLPPEAA AAQQEELGEI 240 VELPRLGTSY ESVESTQEVL SLFETEEWWD NYGNSCEYFF GEENYINMEF TGLENVVSTG 300 FESFLWQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-17 | 73 | 136 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF500012 | 2e-90 | AF500012.1 Lycopersicon esculentum dehydration responsive element binding protein (DREB2) mRNA, complete cds. | |||
GenBank | HG975524 | 2e-90 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166849.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor ERF037-like | ||||
TrEMBL | M0ZHP2 | 1e-113 | M0ZHP2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000986 | 1e-114 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 1e-46 | ERF family protein |