PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03302.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 25974.1 Da PI: 10.1592 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29 | 2.3e-09 | 152 | 184 | 4 | 36 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 ++r +r++kNRe+A rsR+RK+++++ L +k+ Sme2.5_03302.1_g00002.1 152 DQRNKRMIKNRESAARSRARKQESLASLLQKIN 184 789*************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.4E-9 | 145 | 212 | No hit | No description |
SMART | SM00338 | 0.0015 | 149 | 218 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-6 | 153 | 184 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 6.04E-23 | 153 | 217 | No hit | No description |
SuperFamily | SSF57959 | 8.44E-6 | 154 | 207 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 156 | 171 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGSEEHHKGL KKNLATHSSK NPSPSSSTSS SHNNPVPINS KTMEEVWKDI SLSCSRDHMD 60 PQNITTTSST CFGGLILQDL LARPFANDPS PPPTACGSPV PSLPATMLTL NSAHEIHFFS 120 SLNPLRQTEQ KDRSSPTAGR KRHPESDNNS GDQRNKRMIK NRESAARSRA RKQESLASLL 180 QKINQAYTNE LEMEVANLMK ENARLKRQQE QLCLATAGAQ LPKKNSLYRT STAPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561863.1 | 4e-90 | PREDICTED: bZIP transcription factor 27-like | ||||
Swissprot | Q84JK2 | 6e-35 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1U8FZP4 | 1e-88 | A0A1U8FZP4_CAPAN; bZIP transcription factor 27-like | ||||
STRING | PGSC0003DMT400061403 | 1e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3572 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 5e-37 | bZIP family protein |