PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03274.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

CO-like

Protein Properties

Length: 354aa MW: 39110.9 Da PI: 6.6528

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03274.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.2e-06	2	45	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 e++C+ ++ ++ +C+++ lC C e H++ Ht++ Sme2.5_03274.1_g00007.1 2 EPVCDVCKVDRAVVYCKSDVAKLCLHCDREVHSSnflfrkHTRS 45 689***999*******************778999999876 PP
2	zf-B_box	20.4	1.1e-06	46	84	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee....HkgHt 38 +C +++++++ + C + ++lCe C +++ H +H+ Sme2.5_03274.1_g00007.1 46 LICGKCSSEPAVIRCANSAVCLCEGCDSSSenggHDQHQ 84 69***************************9999998897 PP
3	CCT	63.1	8.3e-22	304	347	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F+K+irY+sRKa+A+ R RvKGrFvk+ Sme2.5_03274.1_g00007.1 304 RNEAKMRYNEKKKTRTFNKQIRYASRKARADARRRVKGRFVKAG 347 99***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.698	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.3E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.15E-5	3	47	No hit	No description
PROSITE profile	PS50119	8.788	43	88	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.644	304	346	IPR010402	CCT domain
Pfam	PF06203	1.8E-16	304	346	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEPVCDVCKV DRAVVYCKSD VAKLCLHCDR EVHSSNFLFR KHTRSLICGK CSSEPAVIRC 60 ANSAVCLCEG CDSSSENGGH DQHQKLDFYS GCPSPAELMK KILSEGFDDD QMGNNDSSFH 120 APTEGSVVAS KLNELASCLK FEQWAISIPA ISSNSTYLTS YNIGKKSFFS KGSSFNKQSC 180 TTVKDFGVHG GEDLAEGVDL DELISDSSYK IFISLQQSHH SEDRELDCLV LEKKLSATGS 240 NNDVEIALEA SSGQHEEAAG AIASANFMLM NPICNNNIAL LSPLISTDES SRDWRSEASL 300 QQARNEAKMR YNEKKKTRTF NKQIRYASRK ARADARRRVK GRFVKAGETY DMIQ

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEPVCDVCKV DRAVVYCKSD VAKLCLHCDR EVHSSNFLFR KHTRSLICGK CSSEPAVIRC  60
ANSAVCLCEG CDSSSENGGH DQHQKLDFYS GCPSPAELMK KILSEGFDDD QMGNNDSSFH  120
APTEGSVVAS KLNELASCLK FEQWAISIPA ISSNSTYLTS YNIGKKSFFS KGSSFNKQSC  180
TTVKDFGVHG GEDLAEGVDL DELISDSSYK IFISLQQSHH SEDRELDCLV LEKKLSATGS  240
NNDVEIALEA SSGQHEEAAG AIASANFMLM NPICNNNIAL LSPLISTDES SRDWRSEASL  300
QQARNEAKMR YNEKKKTRTF NKQIRYASRK ARADARRRVK GRFVKAGETY DMIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541526.1	1e-145	PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X2
TrEMBL	A0A1U8E534	1e-144	A0A1U8E534_CAPAN; zinc finger protein CONSTANS-LIKE 12-like isoform X2
STRING	XP_009597063.1	1e-140	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4231	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	8e-50	B-box type zinc finger protein with CCT domain