PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03270.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 376aa MW: 42057.8 Da PI: 4.6314 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g Sme2.5_03270.1_g00005.1 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 128 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-38 | 129 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 129 | 186 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-33 | 129 | 185 | No hit | No description |
Pfam | PF00847 | 1.0E-12 | 129 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 129 | 185 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.3E-10 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MDCHSILCPI KYTEHKKTIR KVTKPSITKP KKTTELRKSS EYNPTIPRTV RISVTDPDAT 60 DSSSDEEELF GRKRVKRYIN EISIETQSIN DVKTLTTGKK RVAEASQPKQ KALKGKEAVQ 120 QPADGAVRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD 180 ALTNFITPPT KEKPEVNVAS NSGYESGDES HNLSSPTSVL RFRTSQSSEE EAEQQSASGS 240 EPTLDETKVD VSDPILVEEP TLYSMNSEQN VEHLECQGET LSITPDYSNK YLPTDVSLLD 300 NFFNFGAAEQ TLLNDTTCFA NDFFTFSSSF DFGNDFVLDP EICKLDDPFQ DLGALEVDNY 360 FKDIGDFSTG DALMAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 128 | 185 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078059.1 | 0.0 | ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | M0ZQQ9 | 0.0 | M0ZQQ9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400006041 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 7e-61 | cytokinin response factor 4 |