PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03270.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 376aa    MW: 42057.8 Da    PI: 4.6314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03270.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19129178255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Sme2.5_03270.1_g00005.1 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178
                              89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29128185IPR001471AP2/ERF domain
SMARTSM003804.6E-38129192IPR001471AP2/ERF domain
PROSITE profilePS5103223.657129186IPR001471AP2/ERF domain
CDDcd000184.04E-33129185No hitNo description
PfamPF008471.0E-12129178IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21129185IPR016177DNA-binding domain
PRINTSPR003674.3E-10130141IPR001471AP2/ERF domain
PRINTSPR003674.3E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDCHSILCPI KYTEHKKTIR KVTKPSITKP KKTTELRKSS EYNPTIPRTV RISVTDPDAT  60
DSSSDEEELF GRKRVKRYIN EISIETQSIN DVKTLTTGKK RVAEASQPKQ KALKGKEAVQ  120
QPADGAVRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD  180
ALTNFITPPT KEKPEVNVAS NSGYESGDES HNLSSPTSVL RFRTSQSSEE EAEQQSASGS  240
EPTLDETKVD VSDPILVEEP TLYSMNSEQN VEHLECQGET LSITPDYSNK YLPTDVSLLD  300
NFFNFGAAEQ TLLNDTTCFA NDFFTFSSSF DFGNDFVLDP EICKLDDPFQ DLGALEVDNY  360
FKDIGDFSTG DALMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21128185159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078059.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLM0ZQQ90.0M0ZQQ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000060410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-61cytokinin response factor 4