PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03250.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 30600.6 Da PI: 9.34 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4e-18 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll+++vk++G g+W+++a+ g++R +k+c++rw +yl Sme2.5_03250.1_g00006.1 24 KGPWTADEDRLLIEYVKLHGEGRWNSVANLTGLRRNGKSCRLRWVNYL 71 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 77 | 121 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Sme2.5_03250.1_g00006.1 77 RGQITPNEERIIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 121 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.001 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.4E-30 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-16 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-17 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.16E-11 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 24.644 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-14 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 77 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 79 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-9 | 81 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MVCEIISEQI GNNWGFIEEI GWRKGPWTAD EDRLLIEYVK LHGEGRWNSV ANLTGLRRNG 60 KSCRLRWVNY LRPDLKRGQI TPNEERIIIE LHARWGNRWS TIARSLPGRT DNEIKNYWRT 120 HFKKKTKNLC DNSEKSRARL WKRQQFHQQQ RQQINNQIEV KRVMPLPTMP HQSKQEMTIL 180 YPNNTIDQQE QVGLFYSMLN NNSTSISPLE PSSSNEDVMW DDLWNLDDFY GHFINTTTYN 240 KTNNTPCLQP MATIPTFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 24 | 126 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-143 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016568105.1 | 1e-149 | PREDICTED: myb-related protein 305-like isoform X1 | ||||
TrEMBL | A0A1U8GAE6 | 1e-147 | A0A1U8GAE6_CAPAN; myb-related protein 305-like isoform X1 | ||||
TrEMBL | A0A2G3CS14 | 1e-147 | A0A2G3CS14_CAPCH; Transcription factor MYB59 | ||||
STRING | PGSC0003DMT400003796 | 1e-132 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 7e-72 | myb domain protein 305 |