PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03205.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 434aa MW: 47307.6 Da PI: 7.2855 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.4e-29 | 201 | 259 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK +g+++prsYYrC+ a +Cpv+k+v+r+ ed +++++tYeg+Hnh+ Sme2.5_03205.1_g00005.1 201 NDGCQWRKYGQKISRGNPCPRSYYRCSVApSCPVRKQVQRCLEDMSILITTYEGTHNHS 259 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.6E-31 | 185 | 261 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-26 | 192 | 261 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.611 | 195 | 261 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-34 | 200 | 260 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-26 | 201 | 258 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MEKISNNSIL GATEMQNNHE EEDIKKAIKD DEFKSARAQV NEVKLENARL KLLLQQIEKD 60 YTCLQARFFN ISQSDLNKST SPTCTIEEDE SELVSLRLGR SPSPSEPKKV DKKRSMREDS 120 DDQSNDGLKL GLDYNTGVSE SDPIKPSNEP SPGPTSEAAK KVKIDDDQSV KKGAGDDEVS 180 QPNVKRARVS VRTKCDYPTI NDGCQWRKYG QKISRGNPCP RSYYRCSVAP SCPVRKQVQR 240 CLEDMSILIT TYEGTHNHSL PIEATAMAST TSAAVSMLLS GSSTSSQISK SISKTTPLYL 300 SNSSSNPLPT ITLDFTTFPT TSSFTSFNFP SNFQSGSGFL PNSLNFSSPQ SSTMPKILGS 360 GCQNYDSTST LPYHNNLTNI GSSQKQFDVN SNKLKEGSSQ QALTETLTKA IASDPSFQSV 420 VAAAISSMVG ATKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 187 | 261 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357198.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
TrEMBL | M1A9L5 | 0.0 | M1A9L5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400017859 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12805 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 2e-63 | WRKY DNA-binding protein 72 |