PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03125.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 445aa MW: 49545.7 Da PI: 6.9331

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03125.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	113	173	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss Sme2.5_03125.1_g00004.1 113 PDKLIPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 173 78999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	113	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-32	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.5	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MSEVRDPSIK LFGKTIGMTQ QETNCVYLHD DHTRSSPLST TSINDDKITL EGEVTQSKQD 60 DELIDPTADS LVEPETSSGI SDDLKMQDAD KETLSSKSIE EEDSSEEKAL KKPDKLIPCP 120 RCNSMETKFC YYNNYNVNQP RYFCKNCQRY WTAGGTMRNV PVGSGRRKNK SSSVSNYHPV 180 QAGRVEAAAQ GMHLPALRTK GTVLTFGSDK PLCDSMVSAL NLAENSHNMS RNEFHGPKRR 240 MPAVRNDQSN GTCSTASSVT DKESNSGTDD LANWNNFQGF PPQVPYFQGA PWPYSGFPVS 300 FYPATPYWGC TVANSWNVPW LSSDQSVQNN TPTSPTLGKH SRNENKLDPT QSRRRDTNMQ 360 DREGERCVVI PKTLRIHDPN EAAKSSIWST LGIRNDKIDS SHGTMLFSAF SAKTQHRNHE 420 HDASAVLQAN PAALSRSLNF RESTQ

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MSEVRDPSIK LFGKTIGMTQ QETNCVYLHD DHTRSSPLST TSINDDKITL EGEVTQSKQD  60
DELIDPTADS LVEPETSSGI SDDLKMQDAD KETLSSKSIE EEDSSEEKAL KKPDKLIPCP  120
RCNSMETKFC YYNNYNVNQP RYFCKNCQRY WTAGGTMRNV PVGSGRRKNK SSSVSNYHPV  180
QAGRVEAAAQ GMHLPALRTK GTVLTFGSDK PLCDSMVSAL NLAENSHNMS RNEFHGPKRR  240
MPAVRNDQSN GTCSTASSVT DKESNSGTDD LANWNNFQGF PPQVPYFQGA PWPYSGFPVS  300
FYPATPYWGC TVANSWNVPW LSSDQSVQNN TPTSPTLGKH SRNENKLDPT QSRRRDTNMQ  360
DREGERCVVI PKTLRIHDPN EAAKSSIWST LGIRNDKIDS SHGTMLFSAF SAKTQHRNHE  420
HDASAVLQAN PAALSRSLNF RESTQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC284850	0.0	KC284850.1 Solanum tuberosum clone CE3130 chromosome 5 cycling DOF factor-like protein (CDF1.2) mRNA, CDF1.2-f allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355111.1	0.0	PREDICTED: cyclic dof factor 1 isoform X1
TrEMBL	M1BKM3	0.0	M1BKM3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400047370	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-84	cycling DOF factor 2