PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03124.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 299aa    MW: 32758.5 Da    PI: 7.6306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03124.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-071259347
                             SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                              W+ eE++ + +a++++  +    +W++ a++++  +t  ++k +++ +
  Sme2.5_03124.1_g00002.1 12 VWSREEEKAFENAIALHWVEdseqQWEKFASMVP-SKTIDELKQHYHLL 59
                             6*****************99**************.***********976 PP
2Myb_DNA-binding38.92e-12137181347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Sme2.5_03124.1_g00002.1 137 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 181
                              7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0011962IPR001005SANT/Myb domain
SuperFamilySSF466896.9E-71267IPR009057Homeodomain-like
PROSITE profilePS500906.4811360IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-41361IPR009057Homeodomain-like
CDDcd001673.40E-41660No hitNo description
PROSITE profilePS5129416.873130186IPR017930Myb domain
SuperFamilySSF466896.9E-17132187IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17134184IPR006447Myb domain, plants
SMARTSM007172.3E-10134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-11135180IPR009057Homeodomain-like
CDDcd001671.00E-9137182No hitNo description
PfamPF002497.3E-11137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSPSDSASSS VVWSREEEKA FENAIALHWV EDSEQQWEKF ASMVPSKTID ELKQHYHLLL  60
DDVAAIEAGH VPIPNYKGEE ASSSSTKEVN LGFSGSVDGR RSNCGYSNGF SGTNHDPVGH  120
GGKGNSRSEQ ERRKGIPWTE EEHRLFLLGL DKFGKGDWRS ISRNFVISRT PTQVASHAQK  180
YFIRLNSMNR DRRRSSIHDI TSINNGGDVS THQAPITGQS VNPNPSNPAA LGPSVKHRNQ  240
PNMHNMGMYG APMGHPVAAP PSHLASAVGT PVMLPHGHHP PYVLPLAYPI PPPPPPMHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341637.10.0PREDICTED: transcription factor DIVARICATA
SwissprotB8A9B27e-82MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH597e-82MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLM1A4210.0M1A421_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000143500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-78MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]