PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03119.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 238aa    MW: 26510.6 Da    PI: 4.4587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03119.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-181060155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ykGVr +k +g+Wv+e+r p++   r r++lg++++ae+Aa+a +aa  +l+g
  Sme2.5_03119.1_g00002.1 10 PKYKGVRLRK-WGKWVSEVRLPNS---RERIWLGSYDSAEKAARAFDAAQFCLRG 60
                             79******99.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.19E-291070No hitNo description
PfamPF008474.8E-121060IPR001471AP2/ERF domain
SMARTSM003807.9E-301174IPR001471AP2/ERF domain
PROSITE profilePS5103221.3381168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-281169IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-201169IPR016177DNA-binding domain
PRINTSPR003675.9E-91223IPR001471AP2/ERF domain
PRINTSPR003675.9E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEGGSPSHQP KYKGVRLRKW GKWVSEVRLP NSRERIWLGS YDSAEKAARA FDAAQFCLRG  60
PKAKFNFPDT HPDISGGQML SPAEIQAVAA RFANDYSHSQ SSGVQEISSQ GNINSHVINV  120
EEEEMSLSST NCEVVQMDTN NNNNNNNNNN NNNNNDNNCT GAEMDGAFYH DMIDNYSYPS  180
SEPFSDPYYP GEGVLGSLSS NLYSPLHFPP RTTPNYDDDD TGNGGDDHCF QQSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15468772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078978.12e-96ethylene-responsive transcription factor ERF016-like
SwissprotQ84QC23e-45ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLM1D1781e-90M1D178_SOLTU; Uncharacterized protein
STRINGSolyc06g054630.1.12e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]