PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03117.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HB-other

Protein Properties

Length: 1685aa MW: 188814 Da PI: 4.9863

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03117.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps++ r+eL++klgLt+rq ++WF+ rR k+k+ Sme2.5_03117.1_g00004.1 24 PKRQMKTPFQLETLERVYAMETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.52E-16	13	79	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.9E-17	16	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	20	80	IPR001356	Homeobox domain
SMART	SM00389	7.7E-18	22	84	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	2.90E-14	25	81	No hit	No description
PROSITE profile	PS50827	15.152	507	566	IPR018501	DDT domain
SMART	SM00571	6.4E-18	507	566	IPR018501	DDT domain
Pfam	PF02791	1.6E-14	509	563	IPR018501	DDT domain
Pfam	PF05066	1.2E-12	688	755	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-6	871	914	IPR028942	WHIM1 domain
Pfam	PF15613	4.5E-15	1042	1114	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1685 aa Download sequence Send to blast
MDGGSEGEGN RNVILSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GGTGGKRNLP ESPPRDDLVV AEAASNGGSG 120 SVSRSGSGSG SGRFDNGDDM PTPSMRFYES PRRAMERRII ACIEAQLGEP LREDSPIVGV 180 EFDEVPPGAF GTPIDMEEGP DHYRQSYESK LYGPYDAKVN VGSALSLSPG LPNGHREAAE 240 PKIVSDKYGQ IAAPYLYDSP VGGPSKNVAT MQGNGHFVGE YGVEGQSFSM MSQHTRQGRF 300 PSSSRDNEFV PVNEDILDRK RKSEDARMGR DVQTNKKRIR KELERQDLLR RKREEQMKKD 360 MEKQDRERKK EELRLMRERQ RKEERFQREE KREMERRERF LQKELVRVER KKQKEELRKE 420 KEAAKQKAAM EKAMARRIAK ESMELIEDER LELMDLAASS KGLSSIASLD YDALQNLESF 480 RESLCEFPPK SVQLKKPFSI QPWIASDDNV GNLLMAWRFC LNFADILGLW PFTLDEFLQA 540 FHDYDSRLLA EIQIALLKLI IKDIEDVART PSGGPGTNQY SAVNPEGGHP QIVEGAYLWG 600 FDIRNWQKHL NPLTWSEVLR QFALSAGFGP PLKKKKERAC LNDSDETKGC EDIVSNLRSG 660 SAALNAVAVM QEKGFMSQRK SRHRLTPGTV KFAAYHVLAL EGDKGLNVLD IAERIQKSGL 720 RDLSTSKTPE ASISVALSRD PILFERIAPS TYNVRLAFRK DPADADAIIS AAKEKIQRYA 780 NGFLSGQNAE DEERDDDSEG EGEVAEGPEV DDLGSLYGVN KNNEQTSILD TCLVNGKSKP 840 SDEVGQQIRV DVGIEGSKSS QECSEIDESK AGEPWVQGLT EGEYSDLCVE ERLSALVALI 900 GIANEGNSIR AILEDRLDAA NALKKQMWAE SQLDKRRLKE ETINKFNDSS FNVIVEGSQS 960 PLGYPNNKNQ GTSPTMLVKE ESAGIIDNVQ NHFENIPAEK SLAAQETFVG QFAVPSGNTA 1020 ERSRMQLKSF IGHKAEEMYV YRSLPLGQDR RHNRYWLFVA SGSSEDPGSG RIFVESPHGC 1080 WRLIDTEEAF DCLLASLDTR GVRESHLHIM LQKIEGPFKE RVRRNMSYGD IIGQHGNKCR 1140 NESSAASSCP APGASADSPG STIYGVSSDS WETSSSFKIE LGRSEEDKKN AFKRYQGFQN 1200 WMWKECLSSS ILRAMRYGKK RCLPLLGICG HCLDSYLSEE GICPSCNKMS CKVDMNGEFL 1260 EQAMYSMDNL KIDYNNLVVS NACPLRVRLM KAMLSFTEVC VPYEALQSSW TEDCRKTWGM 1320 KLQNSSSPED LLQILTQLEG VIKRDYLSAD YETAEELMGL CASSRKAACE STYPESVPQL 1380 PWIPQTTSAV ALRFLELDSS ISYDPQQKTE AELKNKVDCL PVELSSLLIQ KPSLWYASLK 1440 DLQKVEPAEM DHDGPMREEN WDYLSNLPSS SRSRQVVRGR GGSRPRGKLQ KGTTSKPSES 1500 GKAVVRPSET LTQVLIKQGE THGQIHLRGR RTVRKRRIEK KVVEETPPDY LGGGSSRLSL 1560 AVSPRKHATE VFGMNMEGIE AANDNSNSME AAESDDSAPE NTYDFNRSDL MEMSDEDQVV 1620 SVGDGIEDDI DDEDDENDND NHDRYRSHGQ NLERYVNMDD DDSDRDGDVN EDQESDSSES 1680 EDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1685 aa Download sequence Send to blast

MDGGSEGEGN RNVILSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GGTGGKRNLP ESPPRDDLVV AEAASNGGSG  120
SVSRSGSGSG SGRFDNGDDM PTPSMRFYES PRRAMERRII ACIEAQLGEP LREDSPIVGV  180
EFDEVPPGAF GTPIDMEEGP DHYRQSYESK LYGPYDAKVN VGSALSLSPG LPNGHREAAE  240
PKIVSDKYGQ IAAPYLYDSP VGGPSKNVAT MQGNGHFVGE YGVEGQSFSM MSQHTRQGRF  300
PSSSRDNEFV PVNEDILDRK RKSEDARMGR DVQTNKKRIR KELERQDLLR RKREEQMKKD  360
MEKQDRERKK EELRLMRERQ RKEERFQREE KREMERRERF LQKELVRVER KKQKEELRKE  420
KEAAKQKAAM EKAMARRIAK ESMELIEDER LELMDLAASS KGLSSIASLD YDALQNLESF  480
RESLCEFPPK SVQLKKPFSI QPWIASDDNV GNLLMAWRFC LNFADILGLW PFTLDEFLQA  540
FHDYDSRLLA EIQIALLKLI IKDIEDVART PSGGPGTNQY SAVNPEGGHP QIVEGAYLWG  600
FDIRNWQKHL NPLTWSEVLR QFALSAGFGP PLKKKKERAC LNDSDETKGC EDIVSNLRSG  660
SAALNAVAVM QEKGFMSQRK SRHRLTPGTV KFAAYHVLAL EGDKGLNVLD IAERIQKSGL  720
RDLSTSKTPE ASISVALSRD PILFERIAPS TYNVRLAFRK DPADADAIIS AAKEKIQRYA  780
NGFLSGQNAE DEERDDDSEG EGEVAEGPEV DDLGSLYGVN KNNEQTSILD TCLVNGKSKP  840
SDEVGQQIRV DVGIEGSKSS QECSEIDESK AGEPWVQGLT EGEYSDLCVE ERLSALVALI  900
GIANEGNSIR AILEDRLDAA NALKKQMWAE SQLDKRRLKE ETINKFNDSS FNVIVEGSQS  960
PLGYPNNKNQ GTSPTMLVKE ESAGIIDNVQ NHFENIPAEK SLAAQETFVG QFAVPSGNTA  1020
ERSRMQLKSF IGHKAEEMYV YRSLPLGQDR RHNRYWLFVA SGSSEDPGSG RIFVESPHGC  1080
WRLIDTEEAF DCLLASLDTR GVRESHLHIM LQKIEGPFKE RVRRNMSYGD IIGQHGNKCR  1140
NESSAASSCP APGASADSPG STIYGVSSDS WETSSSFKIE LGRSEEDKKN AFKRYQGFQN  1200
WMWKECLSSS ILRAMRYGKK RCLPLLGICG HCLDSYLSEE GICPSCNKMS CKVDMNGEFL  1260
EQAMYSMDNL KIDYNNLVVS NACPLRVRLM KAMLSFTEVC VPYEALQSSW TEDCRKTWGM  1320
KLQNSSSPED LLQILTQLEG VIKRDYLSAD YETAEELMGL CASSRKAACE STYPESVPQL  1380
PWIPQTTSAV ALRFLELDSS ISYDPQQKTE AELKNKVDCL PVELSSLLIQ KPSLWYASLK  1440
DLQKVEPAEM DHDGPMREEN WDYLSNLPSS SRSRQVVRGR GGSRPRGKLQ KGTTSKPSES  1500
GKAVVRPSET LTQVLIKQGE THGQIHLRGR RTVRKRRIEK KVVEETPPDY LGGGSSRLSL  1560
AVSPRKHATE VFGMNMEGIE AANDNSNSME AAESDDSAPE NTYDFNRSDL MEMSDEDQVV  1620
SVGDGIEDDI DDEDDENDND NHDRYRSHGQ NLERYVNMDD DDSDRDGDVN EDQESDSSES  1680
EDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	319	340	KRKSEDARMGRDVQTNKKRIRK
2	335	352	KKRIRKELERQDLLRRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364304.1	0.0	PREDICTED: uncharacterized protein LOC102579072
TrEMBL	A0A1U8FM66	0.0	A0A1U8FM66_CAPAN; homeobox-DDT domain protein RLT1 isoform X1
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1