PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03054.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 293aa MW: 32721.6 Da PI: 7.5807

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03054.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ss Sme2.5_03054.1_g00002.1 16 QDEVQKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKQRSS 76 57889****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	5	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MLACTKPQQE KKPRPQDEVQ KCPRCDSSNT KFCYYNNYSL TQPRYFCKSC RRYWTKGGTL 60 RNVPVGGGCR KKQRSSSSSK RSSPDNQSLM MPTTTCPNNQ ISSLTQVLSY DPNDLGLAFS 120 RLQNQESGQL VYPELQRTIR TEANFPNSLC LTNFGNHDIL ENRGMCTSSA EAISHAGFLD 180 ALKGGFLETP NGFLNHNMYY YGSIGNNGNN MGLVESASGE METNFEIQEV MRSGITTSIA 240 LKEEMCSDNK ILWGYPWQIN GDGNVADFEY SSWQNWNGLG IPSGHGLLNS PLM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006366600.2	1e-161	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	M1CUK7	1e-160	M1CUK7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400075051	1e-161	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6