PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03023.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 1502aa MW: 168051 Da PI: 7.472 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 280.5 | 5.1e-86 | 221 | 572 | 2 | 356 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklf 84 + Ll++Ae vs+++ +a+++L++ + as++g+p+qR+++yf++AL +r+ r++ +l+ ++ +++++ +n s+ a++ ++ Sme2.5_03023.1_g00006.1 221 AQILLAAAEKVSDQQYDRARKFLSQCQLAASNTGNPVQRAVFYFAQALGERIDRETGKLMPKICAETDELNNfciASRFHASYVAL 306 689***************************************************8888888887777777778855555555566* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA 169 ++ P+ ++ h+t qaIle+ve++++vHiiD+ i G+QW++L+qa a+R+ ++ +++iT+++s ++ke++ +tg+ L++fA Sme2.5_03023.1_g00006.1 307 HQEVPFTQVVHFTGIQAILESVETKTKVHIIDLLIRTGVQWASLIQAAAERKhNPIEHMKITAIES---VNKESVLATGKSLESFA 389 ***************************************************956666*********...7899************* PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++++pf+fn++ + ++l+ +++++kp+E ++++ + l ++ +e+ +le +++vk+l+P ++vv+e ea++ns+ F++ Sme2.5_03023.1_g00006.1 390 KSVNIPFSFNIVFLPDRSQLSEDHFDIKPDEGVVIHAEFCLRSMINEPNCLET----AMRVVKRLQPSLMVVSEVEANLNSPLFVN 471 ***********9999******************************99999999....***************************** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 rf+++l yysalfd+le + r++++r+++E+ g i+n+v eg+er++r +l Wr+ l+++G+++v+ls++ qa+l++ Sme2.5_03023.1_g00006.1 472 RFIDSLFYYSALFDCLEDIMKRDDQHRMTLEES-YGGGIRNIVRDEGKERVARSVNLDVWRSFLRRFGMEEVKLSDTCLYQANLII 556 *********************************.899************************************************* PP GRAS 342 rkvk.sdgyrveeesg 356 ++++ + +v++++g Sme2.5_03023.1_g00006.1 557 QQFAcRNSCSVKKSDG 572 ****888899998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.269 | 194 | 569 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-83 | 221 | 572 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS51576 | 200.583 | 499 | 1502 | IPR025778 | Histone-lysine N-methyltransferase, EZ |
SuperFamily | SSF82199 | 2.22E-34 | 1268 | 1297 | No hit | No description |
Gene3D | G3DSA:2.170.270.10 | 2.2E-37 | 1273 | 1297 | No hit | No description |
PROSITE profile | PS50280 | 11.824 | 1350 | 1470 | IPR001214 | SET domain |
SMART | SM00317 | 1.3E-26 | 1350 | 1476 | IPR001214 | SET domain |
SuperFamily | SSF82199 | 2.22E-34 | 1355 | 1473 | No hit | No description |
Gene3D | G3DSA:2.170.270.10 | 2.2E-37 | 1355 | 1476 | No hit | No description |
Pfam | PF00856 | 3.6E-9 | 1390 | 1469 | IPR001214 | SET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031519 | Cellular Component | PcG protein complex | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1502 aa Download sequence Send to blast |
MLGVIPKPSW YYMGNVSECE RLTGRMAEAG DTKRDKAENY SIEHLMDNMA GAEQVSSRPI 60 DSQLHRVDTA KSCNHLSVME NSTYIKNLCT NYGFYQEDAV NQQFQEINQQ EEEMKVHAAH 120 STGQLSRAKI NKVPFLSLAP FELLRNNLRS CKNTGGEKVG DVNGGANVHQ KLSALVIMRL 180 AGERFIQFSS NKFININNLL HPYGSALSNL SPEDNQDVEL AQILLAAAEK VSDQQYDRAR 240 KFLSQCQLAA SNTGNPVQRA VFYFAQALGE RIDRETGKLM PKICAETDEL NNFCIASRFH 300 ASYVALHQEV PFTQVVHFTG IQAILESVET KTKVHIIDLL IRTGVQWASL IQAAAERKHN 360 PIEHMKITAI ESVNKESVLA TGKSLESFAK SVNIPFSFNI VFLPDRSQLS EDHFDIKPDE 420 GVVIHAEFCL RSMINEPNCL ETAMRVVKRL QPSLMVVSEV EANLNSPLFV NRFIDSLFYY 480 SALFDCLEDI MKRDDQHRMT LEESYGGGIR NIVRDEGKER VARSVNLDVW RSFLRRFGME 540 EVKLSDTCLY QANLIIQQFA CRNSCSVKKS DGENEGNSLA SLKYRINQLK RQIQADRVLS 600 VRDKLEENKR KLENHVSELE NHVSELLLLA TSRSDTMKNS GTGKMLSSRI SSPPCKVGGF 660 LQSSGDRDYA NGEEVVSSTT ARLPFIENIP SYTTWIFLDR NQRMTDDQSV VGRRRIYYDQ 720 HGSEALICSD SEEDIAEPEG EKRHFSEGED KILRMASQEF GLKEEVLDIL TQYVGGTTSE 780 ILEHCTVLSE KHQDTDGKSL KDSGESGFGG SMFLDKSLTA ALDSFDNLFC RRCLVFDCHL 840 HGCSQILIDA IEKQSYSSDS EDDRKPCSDQ CYLKVKGAAN QTKYSTVDPV EGPEKHTSEV 900 GSTMVIKRTG DPDEHTDSKM KQGVPDSINT SLEKSDMVLD DQQDPNSCKR RKLSLPTAVS 960 VAEEDGSESN GMSIIANDYV SHSQAPDRSG YNHGTSLHKT GDDVRNEAAD TKKEIVKHAS 1020 CSKNLPEWKP LEKELYSKGV EIFGRNRAES ERLGGKIKGV FLSLHNSLGT FGCTQVRLKG 1080 SPVDYAPAMC RAGKGTALCL IYVALPCICA RGQDEGRKTE IVGACKEVVC GCVRKEVQRL 1140 AITEVRRGRD RSKKNQKRSY SNLLPPRLVV LLKLMNCLIA RNLLPGLKTC MEVSSYMDNR 1200 AVAQRGGSTS LFSEDNGKAD MDSMEPDIPT KSRFLRRRGR TRKLKYSSKS SGHPSIWRRM 1260 ADGKNQSCIQ YNPCGCQPMC GKHCPCLQNA AQKAVRIVSV DATVQRVNAE VDSVRVLRLD 1320 VNVILMSAAI VGLAVVMAHW VSLLGKEKVN VILLSRSDVA GWGAFLKVSR IPNPVYKNDY 1380 LGEYTGELIS HREADKRGKI YDRANSSFLF DLNDQYVLDA YRKGDKLKFA NHSSNPNCYA 1440 KVMLVAGDHR VGIFAKERIE ASEELFYDYR YGPDQAPIWA RKPEGTKNDD SPAPQGRPKK 1500 HQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4mi5_A | 1e-46 | 1352 | 1471 | 97 | 211 | Histone-lysine N-methyltransferase EZH2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1147 | 1155 | GRDRSKKNQ |
2 | 1234 | 1240 | LRRRGRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU057688 | 0.0 | EU057688.1 Solanum lycopersicum EZ1 (EZ1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9ZSM8 | 1e-113 | EZA1_ARATH; Histone-lysine N-methyltransferase EZA1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13910 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-48 | RGA-like 2 |