PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03023.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 597aa MW: 67972.1 Da PI: 4.867 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 302.4 | 1.1e-92 | 218 | 588 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaa 80 lv+lLl++Ae v++++l+la++l++r as++g+p+qRl +yf++AL++r+ r l ++++++++ s + +a Sme2.5_03023.1_g00005.1 218 LVRLLLAAAEEVNNQQLHLARKLISRCMWVASNSGTPVQRLSFYFAKALEERIDR----LTGRYKCKDEDRHLlyikimSPGTNSA 299 689****************************************************....666667777776664444433333344 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerL 165 + +++ P+ ++ +++ q+Ile v +++++H iDf+i G+QW+ L+qaL+++ ++ l+iT+vgs ++ke++e tg+ L Sme2.5_03023.1_g00005.1 300 FLSCHQLIPFNQVMQFAGVQTILENVRSAKKIHLIDFNIRSGIQWIVLIQALTEKGdRPIELLKITAVGS---TEKENIELTGNTL 382 44489************************************************998455559********...58*********** PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 ++fA++lg+pf+f+++ +++++d++ e+ ++k++E++aV + l ++l ++ +l++ ++k+v+s++P+v+vv e ea+hns+ Sme2.5_03023.1_g00005.1 383 HSFAKSLGLPFSFDIVFVSDMKDFKEESVNIKTDETVAVYCNSILRTMLLRPDCLDN----FMKVVRSIQPTVIVVGEVEANHNSP 464 ************************************************977776666....************************* PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 sFl+rf+e+l +ysa+fd++e + r++ r+++E++++g+ i+n+va+eg++r+ r+ +le Wr + ++G+ + +lse+a qa Sme2.5_03023.1_g00005.1 465 SFLNRFTETLFFYSAFFDCFEDCMDRANPCRMTIEEMYFGEGIRNIVAAEGEDRFTRNVKLEVWRVFFARFGMVEEELSESAWYQA 550 ************************************************************************************** PP GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l+l++++ + +++++ + l++gWk+ p+ s+S W+ Sme2.5_03023.1_g00005.1 551 HLILKQFAqGSSCNLHKDGKGLIIGWKGTPIHSLSIWT 588 ********87889999*********************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.336 | 192 | 567 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-90 | 218 | 588 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MANTSISNDN FSDFQDDQFH LKGYERSELV ENGVEDPWFL HKDCVDIDSL YSMCGLNNEE 60 NTSDEQVRTN LLEDQQPSIS DWMQNDFPTN AVMPLQPVKI QSTTEAPKND DFQPQVQEPG 120 NSSNEKPKLF PLASLELLNN HGRLSTKSSE ENLSTNGLSC EARLGNSHNL PMEEILRFAG 180 ERYIQYSTQR LDGLSMFIHP YGSALSGLCM EETRDVELVR LLLAAAEEVN NQQLHLARKL 240 ISRCMWVASN SGTPVQRLSF YFAKALEERI DRLTGRYKCK DEDRHLLYIK IMSPGTNSAF 300 LSCHQLIPFN QVMQFAGVQT ILENVRSAKK IHLIDFNIRS GIQWIVLIQA LTEKGDRPIE 360 LLKITAVGST EKENIELTGN TLHSFAKSLG LPFSFDIVFV SDMKDFKEES VNIKTDETVA 420 VYCNSILRTM LLRPDCLDNF MKVVRSIQPT VIVVGEVEAN HNSPSFLNRF TETLFFYSAF 480 FDCFEDCMDR ANPCRMTIEE MYFGEGIRNI VAAEGEDRFT RNVKLEVWRV FFARFGMVEE 540 ELSESAWYQA HLILKQFAQG SSCNLHKDGK GLIIGWKGTP IHSLSIWTFL QGNNLPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-39 | 236 | 587 | 21 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238918 | 0.0 | AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349181.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | M1AI73 | 0.0 | M1AI73_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023345 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-52 | RGA-like 1 |