PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02969.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 163aa MW: 18731.5 Da PI: 9.8252 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.9e-14 | 57 | 147 | 7 | 84 |
.-HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 7 psdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 +sdv+++ +r+ +p++ + + +g+++++ +++++d++g+s +++++ +k+ +r v+ +GW++ v+an+L+ gD+ Sme2.5_02969.1_g00001.1 57 NSDVNANlSRFLFPNEWCIKLldymstpekekiQGQNATGLDVSVMDKNGKSHDMNFTRWKSLQRLVFNRGWNKLVEANHLQKGDI 142 57777766899999999999999999999999977888999********************************************* PP EEEEE CS B3 80 vvFkl 84 v + + Sme2.5_02969.1_g00001.1 143 VHLWH 147 98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.73E-17 | 50 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-16 | 50 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.79E-16 | 57 | 156 | No hit | No description |
Pfam | PF02362 | 6.1E-12 | 58 | 147 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.516 | 99 | 163 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MLFGKRIFPY AGLNSNNNQQ QPPPYNGLNL PPPNMYLAIL FAQGSQPVYI GSKYVENSDV 60 NANLSRFLFP NEWCIKLLDY MSTPEKEKIQ GQNATGLDVS VMDKNGKSHD MNFTRWKSLQ 120 RLVFNRGWNK LVEANHLQKG DIVHLWHFRT PNTPCFAMNI IKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339802.1 | 4e-62 | PREDICTED: B3 domain-containing protein At2g31720-like | ||||
TrEMBL | M0ZGI2 | 8e-61 | M0ZGI2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000316 | 1e-61 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 3e-11 | RAV family protein |