PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02955.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 196aa    MW: 20614.9 Da    PI: 5.236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02955.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-192879155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             + ykG+r +k++g+Wv+eIr+p     r   r++lg+f t+e+Aa+a++ a+++l+g
  Sme2.5_02955.1_g00003.1 28 PVYKGIRKRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAAAYDVAALALKG 79
                             68*******************9.....4489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-122879IPR001471AP2/ERF domain
PROSITE profilePS5103222.1022987IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-192989IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-272989IPR001471AP2/ERF domain
SMARTSM003804.2E-302993IPR001471AP2/ERF domain
CDDcd000181.89E-163089No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSTSGANDNT SGSGSGSTFR SGSTGRHPVY KGIRKRKSSG KWVSEIREPR SPNRIWLGTF  60
PTPEMAAAAY DVAALALKGR GAELNFPNSA SSLPVPITNS PRDIQAAAAC AAAAVGAAGD  120
ALVGGRSSST RPVVENNNLT PGNNNNEYFM DEDLIFDMPN VIMNMAEGML LSPPRLNLPA  180
DDDNTAGADQ TLWNYP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055093.25e-83ethylene-responsive transcription factor ERF024, partial
SwissprotQ9SJR01e-61ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A3Q7JG669e-81A0A3Q7JG66_SOLLC; Uncharacterized protein
STRINGSolyc10g083560.1.12e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-51ERF family protein