PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_02954.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 389aa MW: 43045.7 Da PI: 7.9707 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.9 | 4.8e-29 | 137 | 194 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ef+rsYY+Ct++ C++kk+vers+ d+++++i+Y +H+h+k Sme2.5_02954.1_g00006.1 137 EDGYNWRKYGQKLVRGNEFTRSYYKCTHPICRAKKQVERSH-DGHITNIHYIAKHEHPK 194 7****************************************.***************85 PP | |||||||
2 | WRKY | 105.1 | 3.6e-33 | 314 | 371 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrC+s+gCp+kk+ver+++dpk+v++ Yeg+H+h+ Sme2.5_02954.1_g00006.1 314 NDGYRWRKYGQKFVKGNPNPRSYYRCSSSGCPAKKHVERASHDPKLVITAYEGQHDHD 371 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-25 | 129 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.93 | 131 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-22 | 134 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-30 | 136 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-22 | 137 | 193 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-35 | 299 | 373 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-29 | 306 | 373 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.99 | 308 | 373 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-38 | 313 | 372 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 314 | 370 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MGISMDDVPQ SNQEDSPLSN VPEKDTEKVH QKKGPESEGG ASESGRVPVL PKKEPYIKSS 60 KSDSPVKDGN SSLVPGKASD FPQQIQIQKM EEVISQSHQE PVTSSTGENA LNKLQPRRDP 120 DTSIQDSSSD HAEKTSEDGY NWRKYGQKLV RGNEFTRSYY KCTHPICRAK KQVERSHDGH 180 ITNIHYIAKH EHPKPLNSPQ ISPELVKPSE MRRPDMPTGK PREGEKSTAL GEACQSIEPS 240 ESLISAAVVS AGGSVPDTVL KPLKSGDEGD NNGSRNLKRR KKEVPTSDDM SPPPKSPSEP 300 RHIVETRSEV DIINDGYRWR KYGQKFVKGN PNPRSYYRCS SSGCPAKKHV ERASHDPKLV 360 ITAYEGQHDH DIPPSRTVMQ NSAEAESTS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-35 | 138 | 374 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-129 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363023.1 | 0.0 | PREDICTED: probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q9SI37 | 6e-70 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | M1A6I4 | 0.0 | M1A6I4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400015754 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4558 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G04880.2 | 8e-71 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
---|---|---|---|
|