PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02954.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 60692.9 Da PI: 6.8198 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 442.8 | 2.4e-135 | 175 | 545 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l+++L++cA+avs+g+l aq l+++l++++s +g+p+qRl ay+ e+L arl s+s+++k+l+++e + s e l+++++++e Sme2.5_02954.1_g00005.1 175 LKQVLIACAKAVSDGELPTAQVLISELRQMVSVSGEPIQRLGAYIFEGLVARLGASGSSICKSLRCKEPA---SFELLSYMHVLYE 257 5799*****************************************************************9...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++P+lkf+++ aN aI ea++ e+rvHiiDf+i qG QW++++qa+a+Rp+gpp++ iTg+++++s + l +g+rL+k+A+ Sme2.5_02954.1_g00005.1 258 ICPYLKFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVPMIQAFAARPGGPPHIHITGIDDSTSAyaRGGGLDIVGQRLSKLAK 343 ***************************************************************998899999************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++vpfef++ +a + d +le+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ F+ r Sme2.5_02954.1_g00005.1 344 TFKVPFEFHA-AAMSGCDGQLENLGIQPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAFFPR 428 **********.88899999******************************************************************* PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 fle+l+yysa+f+s++++lpr ++eri+vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ Sme2.5_02954.1_g00005.1 429 FLETLDYYSAMFESIDMTLPRGHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFNPYPLSSLVNATIKTLLE 514 ************************************************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++ yr+ee++g+l+lgW++r Lv+ +aW+ Sme2.5_02954.1_g00005.1 515 SYSNK-YRLEERDGALYLGWMNRDLVASCAWK 545 ***66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.871 | 149 | 526 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-133 | 175 | 545 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MQASRRRRAA MTNTLYCEPV QKAAAYCLPQ FQTLDSHLSY INGSLGGNHS FQTYHDRYCM 60 LESSSTTGNY TVYHSPSTAS FSSNGSTTSN KKSKPYLSDV RQSPETTNYG SPISGSCITD 120 DVSDFMHKLK ELETVMMGPD ADFQESYDNS LASSIASSEI DSWRQMMLAI PRRDLKQVLI 180 ACAKAVSDGE LPTAQVLISE LRQMVSVSGE PIQRLGAYIF EGLVARLGAS GSSICKSLRC 240 KEPASFELLS YMHVLYEICP YLKFGYMSAN GAIAEAMKDE NRVHIIDFQI AQGSQWVPMI 300 QAFAARPGGP PHIHITGIDD STSAYARGGG LDIVGQRLSK LAKTFKVPFE FHAAAMSGCD 360 GQLENLGIQP GEALAVNFAF TLHHMPDESV STENHRDRLL RMVKNLNPKV VTLVEQESNT 420 NTAAFFPRFL ETLDYYSAMF ESIDMTLPRG HKERINVEQH CLARDVVNII ACEGIERVER 480 HELLGKWKSR FRMAGFNPYP LSSLVNATIK TLLESYSNKY RLEERDGALY LGWMNRDLVA 540 SCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-58 | 177 | 545 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014572 | 0.0 | BT014572.1 Lycopersicon esculentum clone 134027R, mRNA sequence. | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363022.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_015158751.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A0V0IJG7 | 0.0 | A0A0V0IJG7_SOLCH; Putative scarecrow-like transcription factor PAT1-like | ||||
STRING | Solyc07g047950.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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