PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02954.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 545aa    MW: 60692.9 Da    PI: 6.8198
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02954.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.82.4e-1351755451374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+++L++cA+avs+g+l  aq l+++l++++s +g+p+qRl ay+ e+L arl  s+s+++k+l+++e +   s e l+++++++e
  Sme2.5_02954.1_g00005.1 175 LKQVLIACAKAVSDGELPTAQVLISELRQMVSVSGEPIQRLGAYIFEGLVARLGASGSSICKSLRCKEPA---SFELLSYMHVLYE 257
                              5799*****************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+lkf+++ aN aI ea++ e+rvHiiDf+i qG QW++++qa+a+Rp+gpp++ iTg+++++s   +   l  +g+rL+k+A+
  Sme2.5_02954.1_g00005.1 258 ICPYLKFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVPMIQAFAARPGGPPHIHITGIDDSTSAyaRGGGLDIVGQRLSKLAK 343
                              ***************************************************************998899999************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfef++ +a +  d +le+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ F+ r
  Sme2.5_02954.1_g00005.1 344 TFKVPFEFHA-AAMSGCDGQLENLGIQPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAFFPR 428
                              **********.88899999******************************************************************* PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              fle+l+yysa+f+s++++lpr ++eri+vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+
  Sme2.5_02954.1_g00005.1 429 FLETLDYYSAMFESIDMTLPRGHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFNPYPLSSLVNATIKTLLE 514
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Sme2.5_02954.1_g00005.1 515 SYSNK-YRLEERDGALYLGWMNRDLVASCAWK 545
                              ***66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.871149526IPR005202Transcription factor GRAS
PfamPF035148.3E-133175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQASRRRRAA MTNTLYCEPV QKAAAYCLPQ FQTLDSHLSY INGSLGGNHS FQTYHDRYCM  60
LESSSTTGNY TVYHSPSTAS FSSNGSTTSN KKSKPYLSDV RQSPETTNYG SPISGSCITD  120
DVSDFMHKLK ELETVMMGPD ADFQESYDNS LASSIASSEI DSWRQMMLAI PRRDLKQVLI  180
ACAKAVSDGE LPTAQVLISE LRQMVSVSGE PIQRLGAYIF EGLVARLGAS GSSICKSLRC  240
KEPASFELLS YMHVLYEICP YLKFGYMSAN GAIAEAMKDE NRVHIIDFQI AQGSQWVPMI  300
QAFAARPGGP PHIHITGIDD STSAYARGGG LDIVGQRLSK LAKTFKVPFE FHAAAMSGCD  360
GQLENLGIQP GEALAVNFAF TLHHMPDESV STENHRDRLL RMVKNLNPKV VTLVEQESNT  420
NTAAFFPRFL ETLDYYSAMF ESIDMTLPRG HKERINVEQH CLARDVVNII ACEGIERVER  480
HELLGKWKSR FRMAGFNPYP LSSLVNATIK TLLESYSNKY RLEERDGALY LGWMNRDLVA  540
SCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-581775456375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145720.0BT014572.1 Lycopersicon esculentum clone 134027R, mRNA sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363022.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_015158751.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0V0IJG70.0A0A0V0IJG7_SOLCH; Putative scarecrow-like transcription factor PAT1-like
STRINGSolyc07g047950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]