PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02939.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 401aa    MW: 46014.5 Da    PI: 6.4509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02939.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18122168148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g WT+eEd  l+++vkq+G+++W+ Ia+ m  gR +kqc++rw+++l
  Sme2.5_02939.1_g00003.1 122 KGQWTEEEDRNLIKLVKQFGMKRWAQIAENMV-GRAGKQCRERWHNHL 168
                              799*****************************.*************97 PP
2Myb_DNA-binding52.41.3e-16174216145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              ++ W++eE+  lv+a+kq G++ W+ I ++++ gRt++ +k++w+
  Sme2.5_02939.1_g00003.1 174 KDTWSEEEEMMLVEAHKQIGNK-WAEIGKRIP-GRTENAIKNHWN 216
                              679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.489117172IPR017930Myb domain
SuperFamilySSF466898.99E-30121215IPR009057Homeodomain-like
SMARTSM007172.2E-17121170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-27123175IPR009057Homeodomain-like
PfamPF139213.1E-19125185No hitNo description
CDDcd001675.12E-16125168No hitNo description
SMARTSM007171.8E-15173221IPR001005SANT/Myb domain
PROSITE profilePS5129419.643173223IPR017930Myb domain
CDDcd001671.98E-11176219No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19176221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDGDGEENAY NQSYQNLPNN FSTSPLTVIN GFLWSHQSQF SCKQSHEKNY NERIFAQHGG  60
FYDFSNGDIG HANEINFQEP SIIKEQNVLH WNNQEQEMVI SSPKNSRKMA KDGTSSTTML  120
VKGQWTEEED RNLIKLVKQF GMKRWAQIAE NMVGRAGKQC RERWHNHLRP DIKKDTWSEE  180
EEMMLVEAHK QIGNKWAEIG KRIPGRTENA IKNHWNATKR RQKSRRNKLK KQENEGQNES  240
KYHSNILQDY IRSKYFSDHY PSTNTSSGNI INTTPPYSDD DDSPSLLTNQ TYDEELNFMQ  300
KFFGKNSLLE NNGFNSDGCN LYVGSSNMCP MATDQSYNCS EQLHLLDHSA NSTNSLSYNT  360
MNSMDQVAAG SSSSGRNKDS DLMEMVSSSI YPQNTSNSTF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-4312022256158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4312022256158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-441192221104C-Myb DNA-Binding Domain
1msf_C2e-441192221104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754486e-48HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619843.11e-147PREDICTED: transcription factor MYB108-like
TrEMBLA0A1J6IRQ31e-164A0A1J6IRQ3_NICAT; Transcription factor myb98
STRINGXP_009619843.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-62myb domain protein 119