PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02928.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 339aa    MW: 37874.8 Da    PI: 4.3566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02928.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-1798146254
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                              +ykGVr++k +g+W AeIrd +     + +r++lg++ ta eA +a++  r+++e
  Sme2.5_02928.1_g00003.1  98 KYKGVRQRK-WGKWDAEIRDpF-----KgRRVWLGTYKTAVEASRAYEMKRLEFE 146
                              8*******9.**********55.....45**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-2198147IPR001471AP2/ERF domain
SMARTSM003803.0E-1998163IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1598145IPR016177DNA-binding domain
PfamPF008471.8E-1098146IPR001471AP2/ERF domain
CDDcd000189.78E-2398138No hitNo description
PROSITE profilePS5103219.40198157IPR001471AP2/ERF domain
PRINTSPR003676.0E-999110IPR001471AP2/ERF domain
PRINTSPR003676.0E-9121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MPKPVSSKFE KLGRNMKNKV DTNRPVRKIR IVCYDPDATD DSSDDEGIDD SRCKRFVREI  60
KLQIGNSFDP PKGSETECSF QDSNNGEKKT EEEGLVLKYK GVRQRKWGKW DAEIRDPFKG  120
RRVWLGTYKT AVEASRAYEM KRLEFESMAK NSSTNVSEES SGSMVSEHQH QSQNVASGVS  180
EDSVESSYLR TSHSSSSAAL ELDTLTSVSI SAPSLGLNGL NGNEKMSNVA FEANAVKQEE  240
PKLALMEETL SMARVGESMD LDLELESFLI GADDFNQHLD EFVVNDFEDP PVCVIEGDEH  300
LPTGLPDFDD FDFDGYNESF TWMDDAPRTN GTPLNISCP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367037.20.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLM1BAU30.0M1BAU3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-17ERF family protein