PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02928.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 37874.8 Da PI: 4.3566 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 98 | 146 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 +ykGVr++k +g+W AeIrd + + +r++lg++ ta eA +a++ r+++e Sme2.5_02928.1_g00003.1 98 KYKGVRQRK-WGKWDAEIRDpF-----KgRRVWLGTYKTAVEASRAYEMKRLEFE 146 8*******9.**********55.....45**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-21 | 98 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-19 | 98 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-15 | 98 | 145 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-10 | 98 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.78E-23 | 98 | 138 | No hit | No description |
PROSITE profile | PS51032 | 19.401 | 98 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 99 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MPKPVSSKFE KLGRNMKNKV DTNRPVRKIR IVCYDPDATD DSSDDEGIDD SRCKRFVREI 60 KLQIGNSFDP PKGSETECSF QDSNNGEKKT EEEGLVLKYK GVRQRKWGKW DAEIRDPFKG 120 RRVWLGTYKT AVEASRAYEM KRLEFESMAK NSSTNVSEES SGSMVSEHQH QSQNVASGVS 180 EDSVESSYLR TSHSSSSAAL ELDTLTSVSI SAPSLGLNGL NGNEKMSNVA FEANAVKQEE 240 PKLALMEETL SMARVGESMD LDLELESFLI GADDFNQHLD EFVVNDFEDP PVCVIEGDEH 300 LPTGLPDFDD FDFDGYNESF TWMDDAPRTN GTPLNISCP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006367037.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
TrEMBL | M1BAU3 | 0.0 | M1BAU3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041053 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2957 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 5e-17 | ERF family protein |