PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02923.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21752 Da PI: 9.2045 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.1 | 1.5e-15 | 54 | 103 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ie+ + q +skR+ i KKA+EL +LC+++va+++fs+t+++ y Sme2.5_02923.1_g00002.1 54 KKIEDPISFQQFYSKRKDSIVKKANELVILCETDVALLMFSPTDQVTSYY 103 568888888888*********************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.24 | 46 | 106 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-19 | 46 | 105 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.67E-17 | 47 | 125 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-19 | 47 | 118 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-13 | 48 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-15 | 55 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-13 | 68 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-13 | 83 | 104 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAAQAKSGRP GLAQHLRYRL VVVIQGRLGY EFILISRFSS SLIYSMGRNK LVMKKIEDPI 60 SFQQFYSKRK DSIVKKANEL VILCETDVAL LMFSPTDQVT SYYSRGSIED VMLHVINQPN 120 ELNKRYYEPQ VDNISFVQEV DAYKQFLTSA MGRIQQSKAK LLSGEGFLQN GKEPVWDGSR 180 EETDQILVEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360573.1 | 2e-49 | PREDICTED: agamous-like MADS-box protein AGL66 isoform X2 | ||||
Refseq | XP_006360575.1 | 2e-49 | PREDICTED: agamous-like MADS-box protein AGL66 | ||||
Refseq | XP_006360576.1 | 2e-49 | PREDICTED: agamous-like MADS-box protein AGL66 | ||||
Refseq | XP_006360577.1 | 2e-49 | PREDICTED: agamous-like MADS-box protein AGL66 | ||||
Refseq | XP_015170382.1 | 2e-49 | PREDICTED: agamous-like MADS-box protein AGL66 isoform X1 | ||||
Refseq | XP_015170383.1 | 2e-49 | PREDICTED: agamous-like MADS-box protein AGL66 isoform X1 | ||||
Refseq | XP_015170384.1 | 2e-49 | PREDICTED: agamous-like MADS-box protein AGL66 isoform X1 | ||||
TrEMBL | M1CH62 | 1e-55 | M1CH62_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067385 | 2e-56 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-17 | AGAMOUS-like 104 |