PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_02911.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 25691.3 Da PI: 6.7894 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.8 | 5.2e-20 | 10 | 126 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 f+ +P d el+++ L k v+gk+l+ +i +d+y+ ePw+L +++k++++F ++ kk+ ++r nr+t+ g W+++ k Sme2.5_02911.1_g00003.1 10 FHASPCDCELIMQ-LLKFVAGKSLPG--FIGFTDVYSKEPWELM---GESSKKTHYFLTQLKKK--DTRFNRTTRgGGSWSQQHKG 87 44469******77.667899999887..7999***********6...34455666666665554..4689997774789******* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++l++ ++ ++g k+tL f ++++p+ + +W+m+ey l Sme2.5_02911.1_g00003.1 88 KPILDEdEKLVIGYKRTLKFKHKKDPS-LNGRWMMKEYFL 126 *****8455569********9888888.79********76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.062 | 6 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-11 | 9 | 125 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-20 | 12 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MEIKENNVQF HASPCDCELI MQLLKFVAGK SLPGFIGFTD VYSKEPWELM GESSKKTHYF 60 LTQLKKKDTR FNRTTRGGGS WSQQHKGKPI LDEDEKLVIG YKRTLKFKHK KDPSLNGRWM 120 MKEYFLADSL LRQLKSNETK DFVICAIKKN PRSVIKGNAS EASDDVLEYK SFIDRVLQHM 180 ELETQEPKEE TDIFGGENQE PDWLSLLDFE DHALMQNCLN F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016461097.1 | 2e-81 | PREDICTED: uncharacterized protein LOC107784474, partial | ||||
TrEMBL | A0A1S3ZA51 | 4e-80 | A0A1S3ZA51_TOBAC; uncharacterized protein LOC107784474 | ||||
STRING | XP_009618980.1 | 4e-80 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9815 | 7 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33480.2 | 2e-13 | NAC domain containing protein 41 |