PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02906.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 32633.4 Da PI: 8.2142 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.2e-09 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 rWT+eE + + +a +++ ++ W +a++++ g+t ++++ ++ Sme2.5_02906.1_g00002.1 24 RWTPEENKVFEEALALFDKDtpdKWYNVAAMIP-GKTVNDVIKQYRE 69 9********************************.********99986 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 133 | 177 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Sme2.5_02906.1_g00002.1 133 PWTEEEHKQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 19 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.294 | 20 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 4.0E-10 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.0E-11 | 23 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.00E-7 | 24 | 71 | No hit | No description |
Pfam | PF00249 | 2.2E-7 | 24 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-12 | 124 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.565 | 126 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.37E-17 | 128 | 181 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 129 | 181 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.9E-13 | 130 | 180 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 133 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.57E-11 | 133 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MGFLSPATYI KNSSWLFEEN KGTRWTPEEN KVFEEALALF DKDTPDKWYN VAAMIPGKTV 60 NDVIKQYREL VEDISDIEAG LIPVPGYTTS NSFTLEWVNN QDAFHGFKQY YGQSGKRGSS 120 NRSSEHERKK GVPWTEEEHK QFLLGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR 180 QLSGGKDKRR SSIHDITVVN LTESKSISPE DHKSAPSPQA QQHSKMNEMV KTLCEYNSPN 240 QESDITFNSS SGGLMAMPFR GAPSYGLEHG MHNIALQGLQ FGNYNTMC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-19 | 22 | 90 | 8 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246338.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-103 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3Q7HYD0 | 0.0 | A0A3Q7HYD0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g014250.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-109 | MYB family protein |
Publications ? help Back to Top | |||
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