PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02885.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 305aa MW: 35050.1 Da PI: 5.8795

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02885.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.1	4.7e-19	14	81	1	48
TSSS-HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++++G g +W++Ia +++ gRt++++k++w+++l Sme2.5_02885.1_g00007.1 14 KGPWTPEEDQKLTNYINKHGHGswralpklavyisktfllsysRWSAIATHLP-GRTDNEIKNFWNTHL 81 79*************************************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.54	9	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-23	10	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.39E-15	11	77	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-17	13	83	IPR001005	SANT/Myb domain
Pfam	PF00249	9.4E-17	14	81	IPR001005	SANT/Myb domain
CDD	cd00167	7.81E-13	16	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGRSPSSDES GLKKGPWTPE EDQKLTNYIN KHGHGSWRAL PKLAVYISKT FLLSYSRWSA 60 IATHLPGRTD NEIKNFWNTH LKKKLIQMGY DPMTHRPRTD IFNSLQHLIV LANLKELIEN 120 HSWEEQAMRF HYLQNLLQQP HNNMSTLSAI QNVEAYNLLN TNNNLGNHII HQIPSSLDQT 180 IQDLTTFSHL PELHTPCSFQ TSLNKDRVRI QDTEFTILSQ GETSPTSQIW PPSVSSPPPR 240 VINDQRSEEN SSEVVISPCL SEEKKLSDYL FETDNEQSLN NIEEAPASIW SDLLEDSFFQ 300 DINKF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	1e-144	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006366230.1	1e-168	PREDICTED: myb-related protein 315-like
Swissprot	Q9S9Z2	4e-53	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A3Q7GIV0	1e-162	A0A3Q7GIV0_SOLLC; Uncharacterized protein
STRING	Solyc05g051550.1.1	1e-163	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-55	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]