PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02793.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 302aa MW: 33233.8 Da PI: 8.3458 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6e-40 | 26 | 86 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k+++++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkkss Sme2.5_02793.1_g00001.1 26 KDQIVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKSS 86 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 19 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.2E-34 | 27 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEEIIAKTNG SSKPNCVERK LVRPQKDQIV NCPRCNSTNT KFCYYNNYSL SQPRYFCKTC 60 RRYWTEGGSL RNIPVGGGSR KNKKSSLSSP YNSINHGIVN NPLKKLPDLV APLPQRDVIE 120 EYPERHFENR PDQNPSKIIH EGSQDLNLGF SSDFKTITEL IQVPNYDGNN KDNNSPTIST 180 LPPPPSSSSS ASSPSQLSAM ELINGITSRG WNNNSFMTMP NSVYNSSGFS LMPSLNFSLD 240 HGLGNNNNLQ ETNTSGSFLF PFVGLKQVSS TNNNTSEGAN DPLGDQSTNG YWNGMLGGGG 300 SW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 1e-146 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344006.1 | 1e-162 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
TrEMBL | M1AWI3 | 1e-160 | M1AWI3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400031928 | 1e-161 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 9e-45 | Dof family protein |