PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02766.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 333aa    MW: 36673.7 Da    PI: 4.6075
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02766.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-2081131155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p   + r  r +lg+fgta eAa a+++a+++++g
  Sme2.5_02766.1_g00005.1  81 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFGTAIEAALAYDEAARAMYG 131
                              56*****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1481131IPR001471AP2/ERF domain
CDDcd000188.80E-3081139No hitNo description
SuperFamilySSF541713.92E-2082139IPR016177DNA-binding domain
SMARTSM003801.6E-3382145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3082140IPR001471AP2/ERF domain
PROSITE profilePS5103220.79882139IPR001471AP2/ERF domain
PRINTSPR003672.4E-98394IPR001471AP2/ERF domain
PRINTSPR003672.4E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAIVDQGANM DSLPLDYRRK RKSRSRRDGT KNVEETLAKW KEYNQKLDSV DDEGKRMRKA  60
PAKGSKKGCM KGKGGPENSQ CNYRGVRQRT WGKWVAEIRE PNRGNRLWLG TFGTAIEAAL  120
AYDEAARAMY GPCARLNLPK YPSSRESSRD DSASWATTSA SDCTVASSFD EVCPADEIKS  180
ADGATTALGT RLSSVKEEAK NETAGLPGEM ATTEAKDGPA SIDQDMLKSE WDCPDNLNWD  240
EMFDVEELLG MLDSAPASDP APVSTKQFSS DGKQYSHDNQ LVLNLPCEPQ NAVHQAPMTV  300
DYGFDFLKPG RQEDLNFSLD DLAFIDLDSE LGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1582139563ATERF1
3gcc_A2e-1582139563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6417961e-156HM641796.1 Solanum tuberosum dehydration responsive element binding protein 1 (DREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353419.11e-160PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM1C7N51e-159M1C7N5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000615411e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-35DRE-binding protein 2A