PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02745.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 737aa    MW: 83095.8 Da    PI: 5.8299
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02745.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.11e-1183657342374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++ L+ cA+av+++d + a+++L+++++++sp+gd mqRla+yf+++L+ar+a+s++++y  l + +ts    +++l+a++lf  +
  Sme2.5_02745.1_g00001.1 365 RTILTLCAQAVAADDRRTANEFLKQIRQNSSPTGDGMQRLAHYFANGLEARMAGSGTQIYTDLISMPTS---AADVLKAYQLFLAA 447
                              67899**********************************************************999998...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P+ k+s++  N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+
  Sme2.5_02745.1_g00001.1 448 CPFRKLSNFFSNKTIMNLAETASTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLADYAES 533
                              *****************************************************************9******************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              ++vpfef + +a+++e++++e+L+++++E+l+Vn++++  +llde+v ++s+rd vL+l+++l+P+v +    +  +n++ F +rf
  Sme2.5_02745.1_g00001.1 534 FNVPFEFIA-IAQKWETIKVEDLKIQKDEVLVVNCMYRFRNLLDETVMVNSPRDIVLNLIRKLNPDVYIQGIVNGAYNAPFFITRF 618
                              *********.7*************************************************************************** PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                               eal +ys++fd+lea++pre  er  vE+ ++gre++nvvace aer+er et+++W+ r  +aGF+++pl+e++   ak  ++ 
  Sme2.5_02745.1_g00001.1 619 REALFHYSSVFDMLEANIPREIPERLLVEKLIFGREAMNVVACEAAERIERPETYKQWQVRNIRAGFRQLPLNEEILRIAKDRVKA 704
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++d + ++ + ++l++gWk+r ++++S W+
  Sme2.5_02745.1_g00001.1 705 YHKD-FVIDVDGHWLLQGWKGRIMFAASTWK 734
                              **77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.326338715IPR005202Transcription factor GRAS
PfamPF035143.5E-116365734IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MVMDCRNYKG LYDVTSGIQL KDEDDDAKPL FQDLNLINNL RVSDVFVERN PKPDGLVPSA  60
IDNSHEDYDF SDCVLKYISQ MLMEENIEEK ACMFQESAAL QAAERSFYEV IGEKYPPSTN  120
QKILDFGQDG HYVVDSSSNY YSCGSDVTDG LLCPNWNPDL GDTDSSHTQQ FPVDSAFASM  180
TTSQSSHSSP SSSGTVTDAH VDSPVSSIQI PDIFSDSESI MQFKKGVEEA SKFLPIGNSL  240
LLDVRYNVVV KEDNENGKDA KVENHGKQKS PDGARRRKNI HHDDVYVTEE RSNKQSAVFS  300
ESTVRSDLFD KVLLCSGGRN ESALRESWQA VSSKHAPENV LTKGSNGRKS RGKKQGGKRD  360
TVDLRTILTL CAQAVAADDR RTANEFLKQI RQNSSPTGDG MQRLAHYFAN GLEARMAGSG  420
TQIYTDLISM PTSAADVLKA YQLFLAACPF RKLSNFFSNK TIMNLAETAS TVHIIDFGIM  480
YGFQWPCFIQ RLSSRPGGPP KLRITGIDFP NPGFRPAERV EETGKRLADY AESFNVPFEF  540
IAIAQKWETI KVEDLKIQKD EVLVVNCMYR FRNLLDETVM VNSPRDIVLN LIRKLNPDVY  600
IQGIVNGAYN APFFITRFRE ALFHYSSVFD MLEANIPREI PERLLVEKLI FGREAMNVVA  660
CEAAERIERP ETYKQWQVRN IRAGFRQLPL NEEILRIAKD RVKAYHKDFV IDVDGHWLLQ  720
GWKGRIMFAA STWKGAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-553487333378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073886.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A3Q7G0P30.0A0A3Q7G0P3_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000162580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]