PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02728.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 433aa    MW: 49218.9 Da    PI: 5.7005
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02728.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.41.6e-94394181373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..f 84 
                              l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++  +   +s+ +     + +++++l  +
  Sme2.5_02728.1_g00002.1  39 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPNATNFHGSSNLE----RRLMSVTELagY 120
                              5799***************************************************777776655544444....34444444466* PP

                     GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                              +++ P+++f++ + N+ I++a+eg++++Hi+Df+i++++QWp+L++a+a+Rpegpp+lRi +     ++    + + ee+g+rLa+
  Sme2.5_02728.1_g00002.1 121 VDLIPWHRFGFCASNSVIYKAIEGHQKIHILDFSITYCMQWPTLIDAIAKRPEGPPTLRISVPLWRPQVpplLNVSSEEVGQRLAN 206
                              ************************************************************9955433345889999********** PP

                     GRAS 168 fAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqead 247
                              fA+  +vpfef+v+    +   l++l++++L+++ +Eal+Vn++  l +l+d+++       rd +L+ vk+l+P +v++v++++d
  Sme2.5_02728.1_g00002.1 207 FAKFRDVPFEFHVIedlnHDMFLSQLSPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGAisSRDIFLDRVKDLNPCIVTIVDEDCD 292
                              *************9876434478999*******************99999876643332447************************ PP

                     GRAS 248 h.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                              + ns+s+  r++ +++y +  fd++e+ lp++s++r  +E+  +g +i+n++  eg++r+er e+ +k ++r+e+ GF +vp+se+
  Sme2.5_02728.1_g00002.1 293 LvNSSSLTSRIATCFNYLWIPFDAFETFLPKDSRQRLEYEAD-IGHKIENIIGFEGNQRIERLESCNKFSQRMENNGFMSVPFSEE 377
                              ******************************************.******************************************* PP

                     GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                              + k++k+ll +++ ++g++ +ee++ lvl+Wk+++ v +++W
  Sme2.5_02728.1_g00002.1 378 TIKEVKSLLDEHAsGWGMK-KEEHDMLVLTWKGHNSVYATSW 418
                              *************666555.45677899******99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575130No hitNo description
PROSITE profilePS5098544.83613399IPR005202Transcription factor GRAS
PfamPF035145.5E-9239418IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MRGTSTTIPH QNPSLFNNSQ STLSGALQGC IGSLDGACLE KLLLHCASAL ENNDVTLAQQ  60
VMWVLNNLAS SNGDPNQRLT SWFLRALISR ASRVCPNATN FHGSSNLERR LMSVTELAGY  120
VDLIPWHRFG FCASNSVIYK AIEGHQKIHI LDFSITYCMQ WPTLIDAIAK RPEGPPTLRI  180
SVPLWRPQVP PLLNVSSEEV GQRLANFAKF RDVPFEFHVI EDLNHDMFLS QLSPSTLQIR  240
DDEALVVNCQ NWLRYLHDDE QIKGAISSRD IFLDRVKDLN PCIVTIVDED CDLVNSSSLT  300
SRIATCFNYL WIPFDAFETF LPKDSRQRLE YEADIGHKIE NIIGFEGNQR IERLESCNKF  360
SQRMENNGFM SVPFSEETIK EVKSLLDEHA SGWGMKKEEH DMLVLTWKGH NSVYATSWVI  420
VPPPHMDMRI HDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-601041863472Protein SHORT-ROOT
5b3h_B4e-6154184418Protein SHORT-ROOT
5b3h_E4e-6154184418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580687.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_016580688.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A2G3BZT30.0A0A2G3BZT3_CAPCH; Uncharacterized protein
STRINGSolyc07g052960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein