PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02710.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

CAMTA

Protein Properties

Length: 313aa MW: 35524.4 Da PI: 6.0848

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02710.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	155.5	1.1e-48	26	132	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 +e ++rwlk+ e++ iL n+e+h+ +sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah Sme2.5_02710.1_g00003.1 26 REaQTRWLKPAEVLFILRNHENHQ--------LSSGSLFLFNKRILRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAH 103 45599**************988........789*********************************************** PP CG-1 88 seenptfqrrcywlLeeelekivlvhyle 116 +e+np+fqrr+yw+L+ ++++ivlvhy++ Sme2.5_02710.1_g00003.1 104 GEQNPNFQRRSYWMLDPAYDHIVLVHYRD 132 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.456	21	139	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.4E-66	24	134	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.0E-41	27	132	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MKSSDEFLVP TRALGNDGYD INDLIREAQT RWLKPAEVLF ILRNHENHQL SSGSLFLFNK 60 RILRFFRKDG HSWRKKKDGR TVGEAHERLK VGNAEALNCY YAHGEQNPNF QRRSYWMLDP 120 AYDHIVLVHY RDITEGRQNP AFMSESSPIS SAFSPSPSSY STQHTGSTVI ASESYEQYQN 180 QPSPAEICSD AIINNYGTLD TTGRKEEVIS SPGLEMSQAL RRLEEQLSLN DDSFKEIDPL 240 YADAINDDSS LIQMQGNSNS LLLQHHSDIC HDPSLGPRRD TANGEPEGIP NKPLSISLTH 300 PWSQKQNKYQ QVI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566048	0.0	JN566048.1 Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553914.1	1e-163	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	9e-64	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2G3B950	1e-166	A0A2G3B950_CAPCH; Calmodulin-binding transcription activator 4
STRING	Solyc05g015650.2.1	1e-148	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	4e-63	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]