PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02703.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 363aa MW: 41234.9 Da PI: 5.6544 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.5e-30 | 207 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LH+rF+e+v++LGG++kAtPk+il+lm++++Ltl+hvkSHLQkYR Sme2.5_02703.1_g00004.1 207 KTRIRWSEDLHDRFLECVNHLGGADKATPKQILNLMDLESLTLDHVKSHLQKYRN 261 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.543 | 204 | 264 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 205 | 261 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-27 | 205 | 262 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-25 | 207 | 262 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-6 | 211 | 260 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.3E-18 | 289 | 336 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MSIQRFISTQ NNEYFSTDYN FEFPKSSVQD LVDQQLQYSS SSSMISCIGS PSSAFFATER 60 CLGLTQYDVN EDSTSQLIKN YDLQMSSFDP QQCKNGTLED SLAQSEPDFR YKISLPSFIR 120 TEFSTSPFSD VSESEKESLL HLQNELLGEL DTSYRKHPSL PFDGYRDYSL SRDLCCSKLA 180 NMRQQSASPS VSCHNSASSG ASNKPSKTRI RWSEDLHDRF LECVNHLGGA DKATPKQILN 240 LMDLESLTLD HVKSHLQKYR NAKHPESAGK SEKRNSQDAV TDIDSRTGIE IKDALKMQLE 300 AQRCLHEQLE AQRMLQMRIE EQAKKLKMIF DQQQKTNRTL LKTRNSNISS PGVEILVVED 360 SND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-18 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 207 | 264 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-121 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055275.1 | 0.0 | uncharacterized protein LOC107001828 | ||||
TrEMBL | M1C6J9 | 0.0 | M1C6J9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060855 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2491 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 8e-57 | G2-like family protein |