PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02651.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 16014.3 Da PI: 9.8044 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.8 | 1.1e-07 | 71 | 113 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 k++g W +Ird s+ +++ +lg+f+ta e a +++a +++g Sme2.5_02651.1_g00008.1 71 KTKGIWGTQIRDGSN---NTQRWLGTFDTAIEVALVYDKASIEIRG 113 55677*******543...59*********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.009 | 49 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-6 | 70 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-13 | 72 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-8 | 74 | 120 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.48E-16 | 74 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MRQSKKSQKL LVRKSTNLVG KSFVISPCVV HIYFMDDDVA DSSSDEEDNL QGEKFKEHKR 60 ICKEIIIENG KTKGIWGTQI RDGSNNTQRW LGTFDTAIEV ALVYDKASIE IRGANALTNI 120 LKPPPKEINS VKTIPQLRKT NP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769795.1 | 9e-40 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF069-like | ||||
TrEMBL | A0A097F7I6 | 4e-37 | A0A097F7I6_9SOLA; CRF7 | ||||
TrEMBL | A0A2G3AHW8 | 1e-36 | A0A2G3AHW8_CAPAN; Uncharacterized protein | ||||
TrEMBL | M1DM95 | 2e-37 | M1DM95_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g014720.1.1 | 2e-38 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 2e-14 | cytokinin response factor 5 |