PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02594.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 549aa    MW: 61296.6 Da    PI: 7.1668
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02594.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16741135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sme2.5_02594.1_g00005.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                             ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-11546No hitNo description
CDDcd002022.36E-16654No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003207.2E-14741IPR000679Zinc finger, GATA-type
PfamPF139196.7E-11297379IPR028020ASX homology domain
PfamPF165503.8E-9311387IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDLDDH  60
RFSRFKSFPV KNKEVKMLKR KKNHDNPEIG ILPEYNQGLH RKVLDEDTSN RSSSGSAVSN  120
TESYGQFGSA EASDLTENIT NSLPLLPKGP AQSNIWDATV PSRKRTCVNR PKQSSVEKLT  180
KDLYTILHEQ QCSYFSGSSE EDLLFESDKP MVSVEIGHGS VLIRHPSSIG REEESEASSL  240
SVDNKHHSSN EAYSQLTTPP VNISKGVNSS NLVTQRTKKP TGQGVEHDQI KRSKDHLEKL  300
QILGHHNSPL CHIDLKDVLN YEEFTRHLSS DEQQQLLKYL PPVDSFSLPE SLRSMFESSQ  360
FEENLSSFQN LLAEGVFDNS LSGVTVEECR TLKRFLLCYL MKSKWVEQVN LLKDMKCKNS  420
SSSSEVAGGR NVIGTDHSVN MKRPRDGQHP KYLGANTTMK SPKRVAMKSS YEQKEIMEND  480
GSCFSPKSLF ALPSENSFRF TNECSDQDLL LDVPSNSSFP QAELLLPTAS FAAQASTSSS  540
SIYPHLVHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085914.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-153GAT26_ARATH; GATA transcription factor 26
TrEMBLM1CHE60.0M1CHE6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000675060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-155GATA transcription factor 26