PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02584.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 360aa MW: 39038.7 Da PI: 7.4758 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.2e-39 | 25 | 85 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + Sme2.5_02584.1_g00003.1 25 KEQALNCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 85 67999*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.8E-33 | 27 | 83 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 28 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.422 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1902066 | Biological Process | regulation of cell wall pectin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MMSQDNKDES QSSGGGGGST TVRPKEQALN CPRCDSPNTK FCYYNNYSLS QPRHFCKTCR 60 RYWTKGGALR NVPIGGGCRK NKKIKTSSSS SRFSGDSKDT IGGSSDIGGL KFLHGLSPAM 120 DFQLGGLSFP RLSNSSTSVG GSIFNQYSSF GENSAANIGS TSCFSLDPSG SCSGSLLGFN 180 NNFSFSSSML KQGTDGIQEM GSMGVHHGTM ASSIESLSSI NQDLHWKLQQ QRLAMLFGGE 240 NQKENIVSSS IPLHDDQNQI QIQKPQPILF QNLEISSSKQ QEHHQEAFGS NNINSRKDCS 300 TTTTTHGNNL ATEWFFDNSF GVNPSSTNSD NGNANEDQNG NNWNTTIQAW SNLNQYSTLP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 1e-126 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250167.1 | 0.0 | dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A2G2VDA5 | 0.0 | A0A2G2VDA5_CAPBA; Dof zinc finger protein DOF5.3 | ||||
STRING | Solyc11g010940.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5242 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 3e-49 | Dof family protein |