PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02556.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 370aa MW: 39849 Da PI: 8.8384

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02556.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.5	2.5e-37	83	142	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++kcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ Sme2.5_02556.1_g00009.1 83 DSTQKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSN 142 6789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-34	66	140	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	84	140	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	86	140	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	88	124	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MVFSSISAYL DPSNWQQQVG YSIPNPQLPS APSQPTPPQP LVSSTPPPPP PQPQPHHVGG 60 GGGTIRPGSM ADRARLANIP MSDSTQKCPR CESTNTKFCY FNNYNLSQPR HFCKTCRRYW 120 TRGGALRSVP VGGGCRRNKR SNTSSSTTTS AKSSHNNNIS KSQTSSQATS SGTTSNNNST 180 FSSPSSAASL LGLMNPQIHP LCFMSPLGQL TDQHFTPNDN VTMNYSSISS SSPAPLIEGT 240 NENMNFQLGM GSNLEQWRLH QQLANQFPYN LYGGLDSSPA SGSGIYPFHP AQYISNDAGG 300 GGGVISQVRS KVANPMLTQL ALMKMEDNQD HVTSMSRQFL GNENWLSNGD SANWNELSMS 360 FSSSSTSNVP

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MVFSSISAYL DPSNWQQQVG YSIPNPQLPS APSQPTPPQP LVSSTPPPPP PQPQPHHVGG  60
GGGTIRPGSM ADRARLANIP MSDSTQKCPR CESTNTKFCY FNNYNLSQPR HFCKTCRRYW  120
TRGGALRSVP VGGGCRRNKR SNTSSSTTTS AKSSHNNNIS KSQTSSQATS SGTTSNNNST  180
FSSPSSAASL LGLMNPQIHP LCFMSPLGQL TDQHFTPNDN VTMNYSSISS SSPAPLIEGT  240
NENMNFQLGM GSNLEQWRLH QQLANQFPYN LYGGLDSSPA SGSGIYPFHP AQYISNDAGG  300
GGGVISQVRS KVANPMLTQL ALMKMEDNQD HVTSMSRQFL GNENWLSNGD SANWNELSMS  360
FSSSSTSNVP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544703.1	1e-175	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1U8EBV1	1e-174	A0A1U8EBV1_CAPAN; dof zinc finger protein DOF2.4-like
STRING	Solyc10g086440.1.1	1e-164	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-43	Dof family protein