PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02552.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 625aa    MW: 71529.8 Da    PI: 6.5494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02552.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-191360148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd+ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Sme2.5_02552.1_g00001.1 13 KGPWTAEEDKLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 60
                             79********************************************97 PP
2Myb_DNA-binding47.15.3e-1566110147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  T+ E+ ++v++++ +G++ W+tIar ++ gRt++++k++w+++
  Sme2.5_02552.1_g00001.1  66 RGHITPYEETIIVELHAIWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110
                              6677999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.206864IPR017930Myb domain
SuperFamilySSF466891.68E-2911107IPR009057Homeodomain-like
SMARTSM007174.2E-171262IPR001005SANT/Myb domain
PfamPF002496.7E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231467IPR009057Homeodomain-like
CDDcd001673.63E-121560No hitNo description
PROSITE profilePS5129419.22365115IPR017930Myb domain
SMARTSM007171.8E-1365113IPR001005SANT/Myb domain
PfamPF002492.4E-1266110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2368116IPR009057Homeodomain-like
CDDcd001676.53E-970111No hitNo description
PfamPF013993.5E-9477582IPR000717Proteasome component (PCI) domain
SMARTSM000883.3E-15511604IPR000717Proteasome component (PCI) domain
SMARTSM007533.3E-15511604No hitNo description
SuperFamilySSF467851.66E-6520587IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000502Cellular Componentproteasome complex
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MGRRGIIEEE WRKGPWTAEE DKLLIEYVNL HGEGRWNSVA RLAGLKRNGK SCRLRWVNYL  60
RPDLKRGHIT PYEETIIVEL HAIWGNRWST IARSLPGRTD NEIKNYWRTH FKKKVKKSST  120
DNSGKIKTHL LKRQQFQQQS LLNNQIDMKK VMSLFEENDN KVPCHVPKQD MAILYQNNTS  180
HEQEQGGFFY SMINGFGNNL PMPEASSNED IMWDIGLWNL DDLHVNSQSR GSTSSKLGTE  240
EGSHQELTIV SAQSQLSGWY TALADLYQKK LWHQLTLKLE QFVALPVFQA GDGLIQLYHN  300
FITDFETKIN LLKLAHFAVI VSRQYSEKEA AIVFLEGVTE KLHNTKETRI EEPILYIKMQ  360
IALLKLEQGD PKECHKLLDE GKTTLDSMTD IDPSVYASYY WVSSQYHKAC QEFADFYRSA  420
LLYLAYTSVE SLSESFKLDL ASDLSLSALL GDNIYNFGEL LAHPIIKSLI GTKAEWLYHI  480
LQAFNTGDLV HYQKLCHVHQ AAVNAQPALV LNENKLLEKI NILCLMEIIF SRPADDRTIP  540
LSVIAERTKL SVEDVEYLLM KSLSVHLIEG IIDQVEGTVH VSWVQPRVLG IPQIKSLRDR  600
LDNWVDKVHS ALLSVEAETP DLVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6epc_O6e-822516241437626S proteasome non-ATPase regulatory subunit 13
6epd_O6e-822516241437626S proteasome non-ATPase regulatory subunit 13
6epe_O6e-822516241437626S proteasome non-ATPase regulatory subunit 13
6epf_O6e-822516241437626S proteasome non-ATPase regulatory subunit 13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355705.10.0PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B-like
SwissprotQ8RWF00.0PS13A_ARATH; 26S proteasome non-ATPase regulatory subunit 13 homolog A
TrEMBLM1CLG70.0M1CLG7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000699540.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-74myb domain protein 305
Publications ? help Back to Top
  1. Fu H, et al.
    Structure and functional analysis of the 26S proteasome subunits from plants.
    Mol. Biol. Rep., 1999. 26(1-2): p. 137-46
    [PMID:10363660]
  2. Yang P, et al.
    Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms.
    J. Biol. Chem., 2004. 279(8): p. 6401-13
    [PMID:14623884]
  3. Book AJ, et al.
    Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes.
    J. Biol. Chem., 2010. 285(33): p. 25554-69
    [PMID:20516081]