PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02518.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 236aa    MW: 26941.2 Da    PI: 8.1539
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02518.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161663148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WTt Ed++l+  ++++G g+W++ ++  g+ R++k+c++rw +yl
  Sme2.5_02518.1_g00004.1 16 KGPWTTIEDLKLISFIQKHGHGNWRALPKQAGLLRCGKSCRLRWVNYL 63
                             79******************************99************97 PP
2Myb_DNA-binding55.21.6e-1769114148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T+eE++ ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
  Sme2.5_02518.1_g00004.1  69 RGNFTPEEEDTIINLHRAFGNR-WSKIASHLP-GRTDNEIKNVWNTHL 114
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-23866IPR009057Homeodomain-like
PROSITE profilePS5129413.5331163IPR017930Myb domain
SuperFamilySSF466891.8E-3014110IPR009057Homeodomain-like
SMARTSM007171.4E-121565IPR001005SANT/Myb domain
PfamPF002499.3E-151663IPR001005SANT/Myb domain
CDDcd001671.45E-91863No hitNo description
PROSITE profilePS5129425.35864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2867119IPR009057Homeodomain-like
SMARTSM007173.0E-1668116IPR001005SANT/Myb domain
PfamPF002492.6E-1669114IPR001005SANT/Myb domain
CDDcd001671.43E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGKGRAACCD KSKVKKGPWT TIEDLKLISF IQKHGHGNWR ALPKQAGLLR CGKSCRLRWV  60
NYLSPDVKRG NFTPEEEDTI INLHRAFGNR WSKIASHLPG RTDNEIKNVW NTHLKKRLVL  120
MKKEEYNSSS LSSTSTSTHE GKYADSSSTT LGSFSPTSSK ANDQVMDFWE YMLDTCSTPN  180
SIDNNLHSYS KMEMSTTGEH HPQLADEDEC QKWLTYLEIE LGLTTHNQQD HQNNFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27161187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352640.11e-141PREDICTED: myb-related protein Zm1-like
SwissprotQ9SA471e-76MYB58_ARATH; Transcription factor MYB58
TrEMBLM1ASG51e-140M1ASG5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000292351e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-77myb domain protein 58
Publications ? help Back to Top
  1. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]