PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02513.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 354aa    MW: 39517.5 Da    PI: 6.5089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02513.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.4e-153380148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Sme2.5_02513.1_g00003.1 33 KGLWSPEEDEKLMHYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 80
                             678*******************************************97 PP
2Myb_DNA-binding50.64.6e-1686130147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+++++E+e +++++ +lG++ W+ Ia++++ gRt++++k++w++ 
  Sme2.5_02513.1_g00003.1  86 RGAFSPQEEEHIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNST 130
                              89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5862880IPR017930Myb domain
SuperFamilySSF466895.86E-2831127IPR009057Homeodomain-like
SMARTSM007171.4E-103282IPR001005SANT/Myb domain
PfamPF002491.7E-133380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-223487IPR009057Homeodomain-like
CDDcd001676.79E-93680No hitNo description
PROSITE profilePS5129425.10281135IPR017930Myb domain
SMARTSM007171.0E-1485133IPR001005SANT/Myb domain
PfamPF002498.3E-1586130IPR001005SANT/Myb domain
CDDcd001673.20E-1088131No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2688136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRKPEFSSSS GKNNNNNNNN NNNNSNANVK LRKGLWSPEE DEKLMHYMLT NGQGCWSDVA  60
RNAGLQRCGK SCRLRWINYL RPDLKRGAFS PQEEEHIIHL HSLLGNRWSQ IAARLPGRTD  120
NEIKNFWNST LKKRLKNSSS SSTTSPNASD SSSDHPSKDL NMGVTQQGFM SMQKHNLMSM  180
YMDSTSSSSS SMALNTLNVD PFPTLEHTLI NMPNGFNTPS YLSTTQSCMA QGGNIVSSTN  240
GGSLFYGNNH GIFGGSLGME GHELYAPPLE NVSIEYQNVE NGNFSHHQNN NNPNNMTNLI  300
NTSHNFNSSS NIKVENFGGI GNYWEGDDLK VGEWDLEELM KDVSPFPFLD FQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252813522128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361760.10.0PREDICTED: transcription factor MYB46
TrEMBLM1ABG80.0M1ABG8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000189950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-69myb domain protein 83